Hb_004125_080

Information

Type -
Description -
Location Contig4125: 50039-51139
Sequence    

Annotation

kegg
ID vvi:100247693
description dCTP pyrophosphatase 1
nr
ID XP_011030473.1
description PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
swissprot
ID Q91VC0
description dCTP pyrophosphatase 1 OS=Rattus norvegicus GN=Dctpp1 PE=2 SV=1
trembl
ID A0A067KVY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02354 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40823: 50052-51080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004125_080 0.0 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
2 Hb_006590_040 0.0596814832 - - amino acid permease, putative [Ricinus communis]
3 Hb_002374_070 0.0633624 - - amino acid transporter, putative [Ricinus communis]
4 Hb_002411_070 0.0637483138 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
5 Hb_002116_020 0.0742249943 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
6 Hb_008200_010 0.0831584511 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
7 Hb_000373_110 0.0833966575 - - Nodulin, putative [Ricinus communis]
8 Hb_023536_020 0.0843814512 - - Nicotianamine synthase, putative [Ricinus communis]
9 Hb_168031_010 0.095149728 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
10 Hb_000433_060 0.0959886887 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
11 Hb_174644_010 0.1030064258 - - -
12 Hb_000007_020 0.104981327 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_005054_010 0.1067031963 - - amino acid transporter, putative [Ricinus communis]
14 Hb_027402_110 0.1093594897 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
15 Hb_001808_010 0.1138231304 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
16 Hb_014214_010 0.1142264532 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
17 Hb_005695_050 0.1147582563 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
18 Hb_001502_010 0.11934682 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
19 Hb_003839_060 0.1195512148 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
20 Hb_004757_040 0.1206950725 - - -

Gene co-expression network

sample Hb_004125_080 Hb_004125_080 Hb_006590_040 Hb_006590_040 Hb_004125_080--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_004125_080--Hb_002374_070 Hb_002411_070 Hb_002411_070 Hb_004125_080--Hb_002411_070 Hb_002116_020 Hb_002116_020 Hb_004125_080--Hb_002116_020 Hb_008200_010 Hb_008200_010 Hb_004125_080--Hb_008200_010 Hb_000373_110 Hb_000373_110 Hb_004125_080--Hb_000373_110 Hb_006590_040--Hb_002116_020 Hb_168031_010 Hb_168031_010 Hb_006590_040--Hb_168031_010 Hb_006590_040--Hb_008200_010 Hb_006590_040--Hb_002411_070 Hb_006590_040--Hb_002374_070 Hb_002374_070--Hb_002411_070 Hb_002374_070--Hb_008200_010 Hb_023536_020 Hb_023536_020 Hb_002374_070--Hb_023536_020 Hb_002374_070--Hb_002116_020 Hb_002411_070--Hb_000373_110 Hb_002411_070--Hb_023536_020 Hb_002411_070--Hb_002116_020 Hb_002116_020--Hb_168031_010 Hb_005054_010 Hb_005054_010 Hb_002116_020--Hb_005054_010 Hb_002116_020--Hb_000373_110 Hb_001502_010 Hb_001502_010 Hb_008200_010--Hb_001502_010 Hb_005695_050 Hb_005695_050 Hb_008200_010--Hb_005695_050 Hb_027402_110 Hb_027402_110 Hb_008200_010--Hb_027402_110 Hb_000007_020 Hb_000007_020 Hb_008200_010--Hb_000007_020 Hb_000373_110--Hb_168031_010 Hb_000373_110--Hb_023536_020 Hb_000433_060 Hb_000433_060 Hb_000373_110--Hb_000433_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0862555 15.6933 0.974279 39.6753 0.0675662 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.311611 0.677819

CAGE analysis