Hb_001405_240

Information

Type -
Description -
Location Contig1405: 295522-295713
Sequence    

Annotation

kegg
ID rcu:RCOM_0052650
description hypothetical protein
nr
ID XP_002533480.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5G1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0052650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000984_040 0.1779711303 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_000181_370 0.1844398468 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000501_090 0.212341238 - - -
5 Hb_001645_100 0.2136003282 - - -
6 Hb_002053_070 0.2258913603 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 14 [Populus euphratica]
7 Hb_015026_010 0.2305837971 - - -
8 Hb_000976_090 0.2311585293 - - -
9 Hb_066350_010 0.232302882 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
10 Hb_009466_040 0.2331252933 - - hypothetical protein POPTR_0002s10890g [Populus trichocarpa]
11 Hb_002267_040 0.2362360984 - - -
12 Hb_000334_040 0.2397511178 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
13 Hb_050229_030 0.2428993076 - - unnamed protein product [Coffea canephora]
14 Hb_062226_080 0.2435215256 - - -
15 Hb_008385_010 0.2442025139 - - sulfate transporter, putative [Ricinus communis]
16 Hb_005888_040 0.2465631929 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
17 Hb_000146_100 0.2519049298 - - conserved hypothetical protein [Ricinus communis]
18 Hb_014214_010 0.2527612544 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
19 Hb_000840_220 0.2530559369 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
20 Hb_008971_020 0.2543683661 - - PREDICTED: UPF0481 protein At3g47200-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_001405_240 Hb_001405_240 Hb_000984_040 Hb_000984_040 Hb_001405_240--Hb_000984_040 Hb_000181_370 Hb_000181_370 Hb_001405_240--Hb_000181_370 Hb_000501_090 Hb_000501_090 Hb_001405_240--Hb_000501_090 Hb_001645_100 Hb_001645_100 Hb_001405_240--Hb_001645_100 Hb_002053_070 Hb_002053_070 Hb_001405_240--Hb_002053_070 Hb_015026_010 Hb_015026_010 Hb_001405_240--Hb_015026_010 Hb_008971_020 Hb_008971_020 Hb_000984_040--Hb_008971_020 Hb_014214_010 Hb_014214_010 Hb_000984_040--Hb_014214_010 Hb_002411_070 Hb_002411_070 Hb_000984_040--Hb_002411_070 Hb_000433_060 Hb_000433_060 Hb_000984_040--Hb_000433_060 Hb_000976_090 Hb_000976_090 Hb_000984_040--Hb_000976_090 Hb_000181_370--Hb_000984_040 Hb_000032_160 Hb_000032_160 Hb_000181_370--Hb_000032_160 Hb_177587_010 Hb_177587_010 Hb_000181_370--Hb_177587_010 Hb_027136_020 Hb_027136_020 Hb_000181_370--Hb_027136_020 Hb_000334_040 Hb_000334_040 Hb_000181_370--Hb_000334_040 Hb_000501_090--Hb_001645_100 Hb_000501_090--Hb_015026_010 Hb_002267_040 Hb_002267_040 Hb_000501_090--Hb_002267_040 Hb_066350_010 Hb_066350_010 Hb_000501_090--Hb_066350_010 Hb_062226_080 Hb_062226_080 Hb_000501_090--Hb_062226_080 Hb_005888_040 Hb_005888_040 Hb_000501_090--Hb_005888_040 Hb_001645_100--Hb_015026_010 Hb_000146_100 Hb_000146_100 Hb_001645_100--Hb_000146_100 Hb_050229_030 Hb_050229_030 Hb_001645_100--Hb_050229_030 Hb_001645_100--Hb_000334_040 Hb_009466_040 Hb_009466_040 Hb_001645_100--Hb_009466_040 Hb_002053_070--Hb_000976_090 Hb_002053_070--Hb_014214_010 Hb_002053_070--Hb_009466_040 Hb_000056_180 Hb_000056_180 Hb_002053_070--Hb_000056_180 Hb_000061_080 Hb_000061_080 Hb_002053_070--Hb_000061_080 Hb_031022_040 Hb_031022_040 Hb_002053_070--Hb_031022_040 Hb_015026_010--Hb_062226_080 Hb_015026_010--Hb_002267_040 Hb_015026_010--Hb_005888_040 Hb_009252_110 Hb_009252_110 Hb_015026_010--Hb_009252_110 Hb_015026_010--Hb_066350_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.11585 0 13.1482 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77979 0 0 1.32135 0

CAGE analysis