Hb_001488_390

Information

Type -
Description -
Location Contig1488: 315266-316174
Sequence    

Annotation

kegg
ID rcu:RCOM_0048980
description SP1L, putative
nr
ID XP_002533540.1
description SP1L, putative [Ricinus communis]
swissprot
ID Q9LE54
description Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1
trembl
ID B9T5M1
description SP1L, putative OS=Ricinus communis GN=RCOM_0048980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_390 0.0 - - SP1L, putative [Ricinus communis]
2 Hb_000056_190 0.1842003637 - - hypothetical protein [Ricinus communis]
3 Hb_000684_220 0.1927391766 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000692_100 0.1997965545 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_003462_040 0.2000148216 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_105033_010 0.2001520544 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
7 Hb_001008_080 0.20250394 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
8 Hb_002820_150 0.2030845381 - - zinc finger protein, putative [Ricinus communis]
9 Hb_003702_070 0.2037519353 - - unnamed protein product [Vitis vinifera]
10 Hb_000003_580 0.209225747 - - conserved hypothetical protein [Ricinus communis]
11 Hb_014361_090 0.2093820476 - - acyl-CoA binding protein 3A [Vernicia fordii]
12 Hb_003086_030 0.2105981227 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
13 Hb_000109_190 0.2124579482 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
14 Hb_030565_050 0.2129208581 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
15 Hb_001775_080 0.2162904941 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
16 Hb_000330_020 0.2177123759 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
17 Hb_084147_010 0.2189917713 - - amino acid transporter, putative [Ricinus communis]
18 Hb_006570_090 0.2201054425 - - tubulin beta chain, putative [Ricinus communis]
19 Hb_000030_130 0.2229697567 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_007741_140 0.2249945651 - - PREDICTED: SPX domain-containing protein 3-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_001488_390 Hb_001488_390 Hb_000056_190 Hb_000056_190 Hb_001488_390--Hb_000056_190 Hb_000684_220 Hb_000684_220 Hb_001488_390--Hb_000684_220 Hb_000692_100 Hb_000692_100 Hb_001488_390--Hb_000692_100 Hb_003462_040 Hb_003462_040 Hb_001488_390--Hb_003462_040 Hb_105033_010 Hb_105033_010 Hb_001488_390--Hb_105033_010 Hb_001008_080 Hb_001008_080 Hb_001488_390--Hb_001008_080 Hb_000330_020 Hb_000330_020 Hb_000056_190--Hb_000330_020 Hb_000056_190--Hb_003462_040 Hb_000349_200 Hb_000349_200 Hb_000056_190--Hb_000349_200 Hb_000300_480 Hb_000300_480 Hb_000056_190--Hb_000300_480 Hb_003680_030 Hb_003680_030 Hb_000056_190--Hb_003680_030 Hb_000271_220 Hb_000271_220 Hb_000056_190--Hb_000271_220 Hb_030565_050 Hb_030565_050 Hb_000684_220--Hb_030565_050 Hb_002774_120 Hb_002774_120 Hb_000684_220--Hb_002774_120 Hb_000246_130 Hb_000246_130 Hb_000684_220--Hb_000246_130 Hb_000684_220--Hb_000330_020 Hb_000603_020 Hb_000603_020 Hb_000684_220--Hb_000603_020 Hb_000236_160 Hb_000236_160 Hb_000684_220--Hb_000236_160 Hb_000482_120 Hb_000482_120 Hb_000692_100--Hb_000482_120 Hb_004223_240 Hb_004223_240 Hb_000692_100--Hb_004223_240 Hb_001054_040 Hb_001054_040 Hb_000692_100--Hb_001054_040 Hb_000617_330 Hb_000617_330 Hb_000692_100--Hb_000617_330 Hb_006570_090 Hb_006570_090 Hb_000692_100--Hb_006570_090 Hb_001318_100 Hb_001318_100 Hb_000692_100--Hb_001318_100 Hb_001369_010 Hb_001369_010 Hb_003462_040--Hb_001369_010 Hb_006750_010 Hb_006750_010 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_019516_060 Hb_019516_060 Hb_003462_040--Hb_019516_060 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_003462_040--Hb_001195_660 Hb_005532_020 Hb_005532_020 Hb_105033_010--Hb_005532_020 Hb_002675_080 Hb_002675_080 Hb_105033_010--Hb_002675_080 Hb_105033_010--Hb_000271_220 Hb_000422_080 Hb_000422_080 Hb_105033_010--Hb_000422_080 Hb_000042_050 Hb_000042_050 Hb_105033_010--Hb_000042_050 Hb_014361_090 Hb_014361_090 Hb_105033_010--Hb_014361_090 Hb_002495_030 Hb_002495_030 Hb_001008_080--Hb_002495_030 Hb_000003_580 Hb_000003_580 Hb_001008_080--Hb_000003_580 Hb_001008_080--Hb_006750_010 Hb_020378_020 Hb_020378_020 Hb_001008_080--Hb_020378_020 Hb_001195_380 Hb_001195_380 Hb_001008_080--Hb_001195_380 Hb_003086_030 Hb_003086_030 Hb_001008_080--Hb_003086_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193944 0.614392 0.728278 2.25953 0.270584 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.339752 0 0 0.246414 1.26621

CAGE analysis