Hb_003098_010

Information

Type -
Description -
Location Contig3098: 19030-19460
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0015935
description 40s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32752: 18840-31326 , PASA_asmbl_32753: 18866-31356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003098_010 0.0 - - -
2 Hb_000035_280 0.1967548564 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
3 Hb_001449_060 0.2044961247 - - kelch repeat protein, putative [Ricinus communis]
4 Hb_000242_020 0.258946096 - - hypothetical protein CICLE_v100246891mg, partial [Citrus clementina]
5 Hb_000311_030 0.2719217909 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
6 Hb_006642_030 0.2790428526 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
7 Hb_113084_010 0.2876098937 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_089140_120 0.2962895397 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
9 Hb_076038_010 0.3011623615 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011485_090 0.3049508215 - - -
11 Hb_003206_100 0.3053359444 - - -
12 Hb_161294_010 0.3059375675 - - PREDICTED: serine/threonine-protein kinase ppk15 isoform X2 [Jatropha curcas]
13 Hb_128473_010 0.3063253907 - - -
14 Hb_024879_010 0.3075839581 - - unknown [Glycine max]
15 Hb_100105_010 0.3103679599 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
16 Hb_161994_040 0.3112078064 - - -
17 Hb_003813_080 0.3122207161 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
18 Hb_025595_010 0.3123661853 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
19 Hb_001357_330 0.3146039735 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
20 Hb_000676_280 0.3188158947 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003098_010 Hb_003098_010 Hb_000035_280 Hb_000035_280 Hb_003098_010--Hb_000035_280 Hb_001449_060 Hb_001449_060 Hb_003098_010--Hb_001449_060 Hb_000242_020 Hb_000242_020 Hb_003098_010--Hb_000242_020 Hb_000311_030 Hb_000311_030 Hb_003098_010--Hb_000311_030 Hb_006642_030 Hb_006642_030 Hb_003098_010--Hb_006642_030 Hb_113084_010 Hb_113084_010 Hb_003098_010--Hb_113084_010 Hb_000035_280--Hb_113084_010 Hb_118228_010 Hb_118228_010 Hb_000035_280--Hb_118228_010 Hb_000045_280 Hb_000045_280 Hb_000035_280--Hb_000045_280 Hb_002893_120 Hb_002893_120 Hb_000035_280--Hb_002893_120 Hb_004785_050 Hb_004785_050 Hb_000035_280--Hb_004785_050 Hb_005730_130 Hb_005730_130 Hb_001449_060--Hb_005730_130 Hb_001077_020 Hb_001077_020 Hb_001449_060--Hb_001077_020 Hb_076038_010 Hb_076038_010 Hb_001449_060--Hb_076038_010 Hb_001449_060--Hb_000311_030 Hb_002847_020 Hb_002847_020 Hb_001449_060--Hb_002847_020 Hb_009372_050 Hb_009372_050 Hb_000242_020--Hb_009372_050 Hb_161294_010 Hb_161294_010 Hb_000242_020--Hb_161294_010 Hb_000742_190 Hb_000742_190 Hb_000242_020--Hb_000742_190 Hb_074836_010 Hb_074836_010 Hb_000242_020--Hb_074836_010 Hb_001357_280 Hb_001357_280 Hb_000242_020--Hb_001357_280 Hb_161994_040 Hb_161994_040 Hb_000311_030--Hb_161994_040 Hb_000311_030--Hb_006642_030 Hb_008054_050 Hb_008054_050 Hb_000311_030--Hb_008054_050 Hb_065841_010 Hb_065841_010 Hb_000311_030--Hb_065841_010 Hb_068569_010 Hb_068569_010 Hb_000311_030--Hb_068569_010 Hb_013358_100 Hb_013358_100 Hb_000311_030--Hb_013358_100 Hb_006642_030--Hb_161994_040 Hb_000703_110 Hb_000703_110 Hb_006642_030--Hb_000703_110 Hb_000311_040 Hb_000311_040 Hb_006642_030--Hb_000311_040 Hb_006642_030--Hb_008054_050 Hb_002344_130 Hb_002344_130 Hb_006642_030--Hb_002344_130 Hb_000122_120 Hb_000122_120 Hb_113084_010--Hb_000122_120 Hb_000668_090 Hb_000668_090 Hb_113084_010--Hb_000668_090 Hb_033546_020 Hb_033546_020 Hb_113084_010--Hb_033546_020 Hb_001001_050 Hb_001001_050 Hb_113084_010--Hb_001001_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
574.734 203.365 115.004 710.583 0 177.141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.252 241.703 0 45.4781 0

CAGE analysis