Hb_000668_090

Information

Type -
Description -
Location Contig668: 65688-66721
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09350g
description POPTRDRAFT_551545; senescence-associated family protein
nr
ID XP_002302279.2
description senescence-associated family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GUK2
description Senescence-associated family protein OS=Populus trichocarpa GN=POPTR_0002s09350g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_090 0.0 - - senescence-associated family protein [Populus trichocarpa]
2 Hb_001776_030 0.1824391831 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003964_020 0.2178229602 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
4 Hb_000074_100 0.222040324 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001001_050 0.2371779807 - - CXE protein [Hevea brasiliensis]
6 Hb_004619_070 0.245711223 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
7 Hb_004064_030 0.2506409436 - - aldose-1-epimerase, putative [Ricinus communis]
8 Hb_010883_140 0.2572566919 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
9 Hb_113084_010 0.2647670836 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_000236_160 0.2650866476 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
11 Hb_000359_300 0.2657501456 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
12 Hb_000370_070 0.2671533802 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
13 Hb_001976_060 0.2685911553 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
14 Hb_000122_120 0.2703650644 - - PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
15 Hb_000281_060 0.2741334901 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_002903_100 0.2742166018 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
17 Hb_182516_010 0.2754002647 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
18 Hb_000270_870 0.2755144828 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
19 Hb_000544_180 0.2767678957 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
20 Hb_002235_270 0.2773374162 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]

Gene co-expression network

sample Hb_000668_090 Hb_000668_090 Hb_001776_030 Hb_001776_030 Hb_000668_090--Hb_001776_030 Hb_003964_020 Hb_003964_020 Hb_000668_090--Hb_003964_020 Hb_000074_100 Hb_000074_100 Hb_000668_090--Hb_000074_100 Hb_001001_050 Hb_001001_050 Hb_000668_090--Hb_001001_050 Hb_004619_070 Hb_004619_070 Hb_000668_090--Hb_004619_070 Hb_004064_030 Hb_004064_030 Hb_000668_090--Hb_004064_030 Hb_001776_030--Hb_004619_070 Hb_000270_870 Hb_000270_870 Hb_001776_030--Hb_000270_870 Hb_000413_070 Hb_000413_070 Hb_001776_030--Hb_000413_070 Hb_002471_110 Hb_002471_110 Hb_001776_030--Hb_002471_110 Hb_002804_020 Hb_002804_020 Hb_001776_030--Hb_002804_020 Hb_003872_010 Hb_003872_010 Hb_001776_030--Hb_003872_010 Hb_003071_070 Hb_003071_070 Hb_003964_020--Hb_003071_070 Hb_000622_350 Hb_000622_350 Hb_003964_020--Hb_000622_350 Hb_017014_010 Hb_017014_010 Hb_003964_020--Hb_017014_010 Hb_003964_020--Hb_000074_100 Hb_000094_290 Hb_000094_290 Hb_003964_020--Hb_000094_290 Hb_002660_110 Hb_002660_110 Hb_003964_020--Hb_002660_110 Hb_000074_100--Hb_000622_350 Hb_000074_100--Hb_002660_110 Hb_000359_290 Hb_000359_290 Hb_000074_100--Hb_000359_290 Hb_000002_480 Hb_000002_480 Hb_000074_100--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_000074_100--Hb_000890_230 Hb_000720_080 Hb_000720_080 Hb_000074_100--Hb_000720_080 Hb_000424_080 Hb_000424_080 Hb_001001_050--Hb_000424_080 Hb_002235_270 Hb_002235_270 Hb_001001_050--Hb_002235_270 Hb_004449_230 Hb_004449_230 Hb_001001_050--Hb_004449_230 Hb_001001_050--Hb_004064_030 Hb_000964_100 Hb_000964_100 Hb_001001_050--Hb_000964_100 Hb_004619_070--Hb_003872_010 Hb_004619_070--Hb_000270_870 Hb_004619_070--Hb_000413_070 Hb_004374_080 Hb_004374_080 Hb_004619_070--Hb_004374_080 Hb_004619_070--Hb_002804_020 Hb_000313_330 Hb_000313_330 Hb_004064_030--Hb_000313_330 Hb_004064_030--Hb_002235_270 Hb_067118_010 Hb_067118_010 Hb_004064_030--Hb_067118_010 Hb_179645_010 Hb_179645_010 Hb_004064_030--Hb_179645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6894 0.315288 0.647721 4.34424 0.288606 1.16665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.698336 0.149764 0.0906743 0.0806998 1.71122

CAGE analysis