Hb_003964_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig3964: 35833-37383
Sequence    

Annotation

kegg
ID rcu:RCOM_1621120
description hypothetical protein
nr
ID XP_002512106.1
description hypothetical protein RCOM_1621120 [Ricinus communis]
swissprot
ID Q9SHD0
description Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1
trembl
ID B9REG7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1621120 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 010_E17.ab1: 37362-37903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_020 0.0 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
2 Hb_003071_070 0.1580103348 - - sucrose synthase 3 [Hevea brasiliensis]
3 Hb_000622_350 0.1659637536 - - PREDICTED: protein ABIL1 [Jatropha curcas]
4 Hb_017014_010 0.1775163792 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
5 Hb_000074_100 0.1792229225 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000094_290 0.1805166544 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
7 Hb_002660_110 0.1851683507 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
8 Hb_026740_020 0.1895254672 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_000300_090 0.1909153414 - - catalytic, putative [Ricinus communis]
10 Hb_000236_160 0.1924357552 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
11 Hb_000720_080 0.1926440747 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
12 Hb_048702_010 0.1930618706 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
13 Hb_003052_180 0.1937726716 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
14 Hb_004040_030 0.1971234646 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
15 Hb_000889_100 0.1989791066 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
16 Hb_000035_220 0.1992084991 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
17 Hb_000291_160 0.2004482459 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
18 Hb_007192_020 0.2030790831 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
19 Hb_001005_200 0.2034488593 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
20 Hb_000193_300 0.2039532275 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_003964_020 Hb_003964_020 Hb_003071_070 Hb_003071_070 Hb_003964_020--Hb_003071_070 Hb_000622_350 Hb_000622_350 Hb_003964_020--Hb_000622_350 Hb_017014_010 Hb_017014_010 Hb_003964_020--Hb_017014_010 Hb_000074_100 Hb_000074_100 Hb_003964_020--Hb_000074_100 Hb_000094_290 Hb_000094_290 Hb_003964_020--Hb_000094_290 Hb_002660_110 Hb_002660_110 Hb_003964_020--Hb_002660_110 Hb_003052_180 Hb_003052_180 Hb_003071_070--Hb_003052_180 Hb_003071_070--Hb_002660_110 Hb_007574_070 Hb_007574_070 Hb_003071_070--Hb_007574_070 Hb_002603_050 Hb_002603_050 Hb_003071_070--Hb_002603_050 Hb_003071_070--Hb_000622_350 Hb_001842_010 Hb_001842_010 Hb_003071_070--Hb_001842_010 Hb_000173_060 Hb_000173_060 Hb_000622_350--Hb_000173_060 Hb_000622_350--Hb_002660_110 Hb_004126_040 Hb_004126_040 Hb_000622_350--Hb_004126_040 Hb_000622_350--Hb_000094_290 Hb_000622_350--Hb_000074_100 Hb_000889_100 Hb_000889_100 Hb_000622_350--Hb_000889_100 Hb_017014_010--Hb_000889_100 Hb_002611_030 Hb_002611_030 Hb_017014_010--Hb_002611_030 Hb_010003_010 Hb_010003_010 Hb_017014_010--Hb_010003_010 Hb_100137_010 Hb_100137_010 Hb_017014_010--Hb_100137_010 Hb_048702_010 Hb_048702_010 Hb_017014_010--Hb_048702_010 Hb_000077_290 Hb_000077_290 Hb_017014_010--Hb_000077_290 Hb_000074_100--Hb_002660_110 Hb_000359_290 Hb_000359_290 Hb_000074_100--Hb_000359_290 Hb_000002_480 Hb_000002_480 Hb_000074_100--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_000074_100--Hb_000890_230 Hb_000720_080 Hb_000720_080 Hb_000074_100--Hb_000720_080 Hb_000094_290--Hb_000173_060 Hb_000300_090 Hb_000300_090 Hb_000094_290--Hb_000300_090 Hb_000094_290--Hb_000889_100 Hb_011926_040 Hb_011926_040 Hb_000094_290--Hb_011926_040 Hb_000094_290--Hb_010003_010 Hb_002660_110--Hb_003052_180 Hb_122636_010 Hb_122636_010 Hb_002660_110--Hb_122636_010 Hb_000008_190 Hb_000008_190 Hb_002660_110--Hb_000008_190 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08265 0.249203 0.472683 2.93367 0.114673 0.952363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.240421 0.26008 0.222387 0.669769 1.18876

CAGE analysis