Hb_005730_130

Information

Type -
Description -
Location Contig5730: 143549-144124
Sequence    

Annotation

kegg
ID tcc:TCM_029017
description PRA1 family protein
nr
ID XP_007024460.1
description PRA1 family protein [Theobroma cacao]
swissprot
ID Q9C889
description PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
trembl
ID A0A061GD60
description PRA1 family protein OS=Theobroma cacao GN=TCM_029017 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005730_130 0.0 - - PRA1 family protein [Theobroma cacao]
2 Hb_000258_320 0.2011171489 - - -
3 Hb_000544_180 0.207207903 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
4 Hb_010560_060 0.2132064123 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
5 Hb_009693_030 0.2150916836 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000098_020 0.2185879025 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
7 Hb_003177_010 0.2197022266 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
8 Hb_003654_010 0.2203902871 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
9 Hb_170487_010 0.2250746531 - - -
10 Hb_003858_040 0.225143743 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
11 Hb_001449_060 0.2267537437 - - kelch repeat protein, putative [Ricinus communis]
12 Hb_000056_230 0.2267674008 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
13 Hb_026447_030 0.228262342 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
14 Hb_001882_040 0.2295420206 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
15 Hb_000996_180 0.2304874501 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
16 Hb_000886_060 0.2311902948 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
17 Hb_003304_050 0.233244126 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
18 Hb_001865_040 0.2337307407 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_002196_010 0.233968973 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
20 Hb_001052_040 0.2355790477 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005730_130 Hb_005730_130 Hb_000258_320 Hb_000258_320 Hb_005730_130--Hb_000258_320 Hb_000544_180 Hb_000544_180 Hb_005730_130--Hb_000544_180 Hb_010560_060 Hb_010560_060 Hb_005730_130--Hb_010560_060 Hb_009693_030 Hb_009693_030 Hb_005730_130--Hb_009693_030 Hb_000098_020 Hb_000098_020 Hb_005730_130--Hb_000098_020 Hb_003177_010 Hb_003177_010 Hb_005730_130--Hb_003177_010 Hb_000169_190 Hb_000169_190 Hb_000258_320--Hb_000169_190 Hb_035318_010 Hb_035318_010 Hb_000258_320--Hb_035318_010 Hb_000504_170 Hb_000504_170 Hb_000258_320--Hb_000504_170 Hb_007083_010 Hb_007083_010 Hb_000258_320--Hb_007083_010 Hb_014720_170 Hb_014720_170 Hb_000258_320--Hb_014720_170 Hb_000996_180 Hb_000996_180 Hb_000258_320--Hb_000996_180 Hb_130323_010 Hb_130323_010 Hb_000544_180--Hb_130323_010 Hb_002217_380 Hb_002217_380 Hb_000544_180--Hb_002217_380 Hb_009485_020 Hb_009485_020 Hb_000544_180--Hb_009485_020 Hb_002235_130 Hb_002235_130 Hb_000544_180--Hb_002235_130 Hb_086022_010 Hb_086022_010 Hb_000544_180--Hb_086022_010 Hb_002783_250 Hb_002783_250 Hb_000544_180--Hb_002783_250 Hb_010560_060--Hb_000098_020 Hb_116349_160 Hb_116349_160 Hb_010560_060--Hb_116349_160 Hb_028358_010 Hb_028358_010 Hb_010560_060--Hb_028358_010 Hb_007803_060 Hb_007803_060 Hb_010560_060--Hb_007803_060 Hb_002111_060 Hb_002111_060 Hb_010560_060--Hb_002111_060 Hb_000563_600 Hb_000563_600 Hb_010560_060--Hb_000563_600 Hb_009693_030--Hb_000996_180 Hb_009693_030--Hb_003177_010 Hb_089889_020 Hb_089889_020 Hb_009693_030--Hb_089889_020 Hb_001910_020 Hb_001910_020 Hb_009693_030--Hb_001910_020 Hb_107847_010 Hb_107847_010 Hb_009693_030--Hb_107847_010 Hb_073973_160 Hb_073973_160 Hb_009693_030--Hb_073973_160 Hb_000098_020--Hb_002111_060 Hb_000157_200 Hb_000157_200 Hb_000098_020--Hb_000157_200 Hb_000516_040 Hb_000516_040 Hb_000098_020--Hb_000516_040 Hb_078477_050 Hb_078477_050 Hb_000098_020--Hb_078477_050 Hb_000258_150 Hb_000258_150 Hb_000098_020--Hb_000258_150 Hb_162378_010 Hb_162378_010 Hb_003177_010--Hb_162378_010 Hb_002267_090 Hb_002267_090 Hb_003177_010--Hb_002267_090 Hb_001279_330 Hb_001279_330 Hb_003177_010--Hb_001279_330 Hb_000789_100 Hb_000789_100 Hb_003177_010--Hb_000789_100 Hb_000265_220 Hb_000265_220 Hb_003177_010--Hb_000265_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.633 42.1348 37.9893 83.8457 48.2978 54.2358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7858 8.94336 10.8516 4.6136 1.13521

CAGE analysis