Hb_002267_090

Information

Type -
Description -
Location Contig2267: 87526-89747
Sequence    

Annotation

kegg
ID rcu:RCOM_1491950
description Cytochrome c oxidase assembly protein COX19, putative
nr
ID XP_002515994.1
description Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
swissprot
ID P0CM86
description Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=COX19 PE=3 SV=1
trembl
ID B9RQH5
description Cytochrome c oxidase assembly protein COX19, putative OS=Ricinus communis GN=RCOM_1491950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23534: 88545-89730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002267_090 0.0 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
2 Hb_000920_280 0.104938886 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
3 Hb_001279_330 0.1234090736 - - Protein bem46, putative [Ricinus communis]
4 Hb_000617_220 0.1254367673 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_000640_220 0.1282206824 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
6 Hb_006623_020 0.1289033435 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
7 Hb_001754_240 0.1297773349 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
8 Hb_162378_010 0.1333657611 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
9 Hb_004525_100 0.1359591467 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
10 Hb_005656_210 0.1368627295 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
11 Hb_152453_010 0.1377153965 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
12 Hb_000211_110 0.1395784876 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
13 Hb_003091_010 0.1405248349 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
14 Hb_004032_060 0.1421253757 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
15 Hb_001894_030 0.1423186926 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
16 Hb_000976_080 0.1423309441 - - hypothetical protein VITISV_034376 [Vitis vinifera]
17 Hb_004376_030 0.1425886645 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
18 Hb_000261_520 0.1431368153 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
19 Hb_028707_090 0.1438449365 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
20 Hb_007757_100 0.1441524119 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002267_090 Hb_002267_090 Hb_000920_280 Hb_000920_280 Hb_002267_090--Hb_000920_280 Hb_001279_330 Hb_001279_330 Hb_002267_090--Hb_001279_330 Hb_000617_220 Hb_000617_220 Hb_002267_090--Hb_000617_220 Hb_000640_220 Hb_000640_220 Hb_002267_090--Hb_000640_220 Hb_006623_020 Hb_006623_020 Hb_002267_090--Hb_006623_020 Hb_001754_240 Hb_001754_240 Hb_002267_090--Hb_001754_240 Hb_000920_280--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_000920_280--Hb_003091_010 Hb_000211_110 Hb_000211_110 Hb_000920_280--Hb_000211_110 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_003142_070 Hb_003142_070 Hb_000920_280--Hb_003142_070 Hb_010968_010 Hb_010968_010 Hb_000920_280--Hb_010968_010 Hb_007757_100 Hb_007757_100 Hb_001279_330--Hb_007757_100 Hb_000424_230 Hb_000424_230 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_005368_010 Hb_005368_010 Hb_001279_330--Hb_005368_010 Hb_005271_080 Hb_005271_080 Hb_001279_330--Hb_005271_080 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_021422_010 Hb_021422_010 Hb_000640_220--Hb_021422_010 Hb_002477_130 Hb_002477_130 Hb_000640_220--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_000365_140 Hb_000365_140 Hb_000640_220--Hb_000365_140 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100 Hb_000808_250 Hb_000808_250 Hb_006623_020--Hb_000808_250 Hb_006623_020--Hb_021422_010 Hb_003018_060 Hb_003018_060 Hb_006623_020--Hb_003018_060 Hb_006623_020--Hb_003091_010 Hb_001754_240--Hb_003091_010 Hb_001754_240--Hb_006623_020 Hb_004701_030 Hb_004701_030 Hb_001754_240--Hb_004701_030 Hb_001754_240--Hb_000617_220 Hb_001754_240--Hb_000923_040 Hb_004656_060 Hb_004656_060 Hb_001754_240--Hb_004656_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7509 5.26561 12.7137 11.2564 40.5764 18.5861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.49955 11.4067 3.57273 4.14182 3.45748

CAGE analysis