Hb_002783_250

Information

Type -
Description -
Location Contig2783: 222458-223479
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26030g
description POPTRDRAFT_715445; GAST-like gene product family protein
nr
ID NP_001295614.1
description gibberellin-regulated protein 1-like precursor [Jatropha curcas]
swissprot
ID Q93X17
description Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1
trembl
ID C9E1T3
description Gast1-like protein OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29062: 222617-223577
cDNA
(Sanger)
(ID:Location)		 011_L10.ab1: 222751-223540

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_250 0.0 - - gibberellin-regulated protein 1-like precursor [Jatropha curcas]
2 Hb_000544_180 0.1718535669 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
3 Hb_130323_010 0.2163542594 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
4 Hb_003177_010 0.2269958886 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
5 Hb_001266_070 0.231379093 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
6 Hb_002235_130 0.240810781 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000281_060 0.2481227771 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_050686_010 0.248173631 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000979_010 0.2540890607 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
10 Hb_002498_050 0.2549509603 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
11 Hb_000311_030 0.2571704294 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
12 Hb_006483_010 0.2582796728 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_009485_020 0.2583939092 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
14 Hb_008054_050 0.2602122678 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
15 Hb_001367_010 0.2608487094 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_026447_030 0.2626421833 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
17 Hb_000329_420 0.2629496839 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
18 Hb_000853_260 0.2632226201 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
19 Hb_001097_060 0.2638881261 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
20 Hb_182516_010 0.266189342 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]

Gene co-expression network

sample Hb_002783_250 Hb_002783_250 Hb_000544_180 Hb_000544_180 Hb_002783_250--Hb_000544_180 Hb_130323_010 Hb_130323_010 Hb_002783_250--Hb_130323_010 Hb_003177_010 Hb_003177_010 Hb_002783_250--Hb_003177_010 Hb_001266_070 Hb_001266_070 Hb_002783_250--Hb_001266_070 Hb_002235_130 Hb_002235_130 Hb_002783_250--Hb_002235_130 Hb_000281_060 Hb_000281_060 Hb_002783_250--Hb_000281_060 Hb_000544_180--Hb_130323_010 Hb_002217_380 Hb_002217_380 Hb_000544_180--Hb_002217_380 Hb_009485_020 Hb_009485_020 Hb_000544_180--Hb_009485_020 Hb_000544_180--Hb_002235_130 Hb_086022_010 Hb_086022_010 Hb_000544_180--Hb_086022_010 Hb_130323_010--Hb_009485_020 Hb_003858_040 Hb_003858_040 Hb_130323_010--Hb_003858_040 Hb_000300_320 Hb_000300_320 Hb_130323_010--Hb_000300_320 Hb_001396_280 Hb_001396_280 Hb_130323_010--Hb_001396_280 Hb_000983_170 Hb_000983_170 Hb_130323_010--Hb_000983_170 Hb_009693_030 Hb_009693_030 Hb_003177_010--Hb_009693_030 Hb_162378_010 Hb_162378_010 Hb_003177_010--Hb_162378_010 Hb_002267_090 Hb_002267_090 Hb_003177_010--Hb_002267_090 Hb_001279_330 Hb_001279_330 Hb_003177_010--Hb_001279_330 Hb_000789_100 Hb_000789_100 Hb_003177_010--Hb_000789_100 Hb_000265_220 Hb_000265_220 Hb_003177_010--Hb_000265_220 Hb_002498_050 Hb_002498_050 Hb_001266_070--Hb_002498_050 Hb_028707_080 Hb_028707_080 Hb_001266_070--Hb_028707_080 Hb_001266_070--Hb_000281_060 Hb_011942_060 Hb_011942_060 Hb_001266_070--Hb_011942_060 Hb_000077_290 Hb_000077_290 Hb_001266_070--Hb_000077_290 Hb_000230_180 Hb_000230_180 Hb_001266_070--Hb_000230_180 Hb_018954_020 Hb_018954_020 Hb_002235_130--Hb_018954_020 Hb_008406_140 Hb_008406_140 Hb_002235_130--Hb_008406_140 Hb_000497_230 Hb_000497_230 Hb_002235_130--Hb_000497_230 Hb_003376_050 Hb_003376_050 Hb_002235_130--Hb_003376_050 Hb_005271_080 Hb_005271_080 Hb_002235_130--Hb_005271_080 Hb_002235_130--Hb_001279_330 Hb_001474_040 Hb_001474_040 Hb_000281_060--Hb_001474_040 Hb_000281_060--Hb_002498_050 Hb_024074_020 Hb_024074_020 Hb_000281_060--Hb_024074_020 Hb_017014_010 Hb_017014_010 Hb_000281_060--Hb_017014_010 Hb_034507_040 Hb_034507_040 Hb_000281_060--Hb_034507_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.8261 7.16358 11.8242 106.535 67.7352 36.3896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0615 2.54364 3.13778 4.01098 4.9171

CAGE analysis