Hb_000300_320

Information

Type -
Description -
Location Contig300: 278057-287855
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05550g
description POPTRDRAFT_914128; hypothetical protein
nr
ID XP_012070394.1
description PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02673 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_320 0.0 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
2 Hb_001541_230 0.117741585 - - unnamed protein product [Vitis vinifera]
3 Hb_000011_190 0.1219395341 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
4 Hb_005503_040 0.1265965728 - - PREDICTED: AMP deaminase [Jatropha curcas]
5 Hb_000983_170 0.1269837385 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
6 Hb_012325_030 0.135089931 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002791_030 0.1355058934 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
8 Hb_001396_280 0.1356004406 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
9 Hb_080313_010 0.1388768986 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
10 Hb_001195_560 0.1405385298 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
11 Hb_000031_290 0.1416334755 - - hypothetical protein POPTR_0006s28540g [Populus trichocarpa]
12 Hb_006816_050 0.1420509236 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
13 Hb_002044_050 0.142139763 - - -
14 Hb_130323_010 0.1423955898 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
15 Hb_000376_090 0.1425373981 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
16 Hb_176152_010 0.1447172573 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
17 Hb_004668_060 0.1455838275 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
18 Hb_006065_050 0.1492485123 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
19 Hb_002837_060 0.1494097629 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
20 Hb_002477_130 0.1495586235 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000300_320 Hb_000300_320 Hb_001541_230 Hb_001541_230 Hb_000300_320--Hb_001541_230 Hb_000011_190 Hb_000011_190 Hb_000300_320--Hb_000011_190 Hb_005503_040 Hb_005503_040 Hb_000300_320--Hb_005503_040 Hb_000983_170 Hb_000983_170 Hb_000300_320--Hb_000983_170 Hb_012325_030 Hb_012325_030 Hb_000300_320--Hb_012325_030 Hb_002791_030 Hb_002791_030 Hb_000300_320--Hb_002791_030 Hb_030385_010 Hb_030385_010 Hb_001541_230--Hb_030385_010 Hb_000000_270 Hb_000000_270 Hb_001541_230--Hb_000000_270 Hb_000227_090 Hb_000227_090 Hb_001541_230--Hb_000227_090 Hb_006816_050 Hb_006816_050 Hb_001541_230--Hb_006816_050 Hb_001541_230--Hb_005503_040 Hb_001541_230--Hb_000011_190 Hb_000011_190--Hb_005503_040 Hb_004668_060 Hb_004668_060 Hb_000011_190--Hb_004668_060 Hb_000982_060 Hb_000982_060 Hb_000011_190--Hb_000982_060 Hb_007508_080 Hb_007508_080 Hb_000011_190--Hb_007508_080 Hb_005000_320 Hb_005000_320 Hb_000011_190--Hb_005000_320 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_000683_070 Hb_000683_070 Hb_005503_040--Hb_000683_070 Hb_005503_040--Hb_004668_060 Hb_000617_100 Hb_000617_100 Hb_005503_040--Hb_000617_100 Hb_005503_040--Hb_007508_080 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010 Hb_000243_160 Hb_000243_160 Hb_000983_170--Hb_000243_160 Hb_003038_120 Hb_003038_120 Hb_000983_170--Hb_003038_120 Hb_002837_060 Hb_002837_060 Hb_000983_170--Hb_002837_060 Hb_001396_280 Hb_001396_280 Hb_000983_170--Hb_001396_280 Hb_000034_080 Hb_000034_080 Hb_000983_170--Hb_000034_080 Hb_001077_030 Hb_001077_030 Hb_000983_170--Hb_001077_030 Hb_000212_240 Hb_000212_240 Hb_012325_030--Hb_000212_240 Hb_002273_130 Hb_002273_130 Hb_012325_030--Hb_002273_130 Hb_012325_030--Hb_005503_040 Hb_001030_110 Hb_001030_110 Hb_012325_030--Hb_001030_110 Hb_103012_010 Hb_103012_010 Hb_012325_030--Hb_103012_010 Hb_001195_560 Hb_001195_560 Hb_012325_030--Hb_001195_560 Hb_002791_030--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_002791_030--Hb_001377_160 Hb_000398_020 Hb_000398_020 Hb_002791_030--Hb_000398_020 Hb_000318_120 Hb_000318_120 Hb_002791_030--Hb_000318_120 Hb_000261_100 Hb_000261_100 Hb_002791_030--Hb_000261_100 Hb_007558_070 Hb_007558_070 Hb_002791_030--Hb_007558_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.414388 0.337733 0.157751 0.487164 0.633941 0.368103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.475254 0.140151 0.0852125 0.207354 0.189264

CAGE analysis