Hb_000243_160

Information

Type -
Description -
Location Contig243: 135723-137686
Sequence    

Annotation

kegg
ID rcu:RCOM_0415510
description glutaredoxin-1, grx1, putative
nr
ID XP_002533656.1
description glutaredoxin-1, grx1, putative [Ricinus communis]
swissprot
ID Q9FVX1
description Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1
trembl
ID B9T5Y7
description Glutaredoxin-1, grx1, putative OS=Ricinus communis GN=RCOM_0415510 PE=4 SV=1
Gene Ontology
ID GO:0005794
description glutaredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25365: 135774-137580 , PASA_asmbl_25366: 135793-137608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_160 0.0 - - glutaredoxin-1, grx1, putative [Ricinus communis]
2 Hb_000983_170 0.0710186409 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
3 Hb_001418_040 0.0879532053 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
4 Hb_000031_280 0.095088826 - - -
5 Hb_000034_080 0.0961982578 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
6 Hb_003688_090 0.0984309655 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
7 Hb_003038_120 0.1020459656 - - rer1 protein, putative [Ricinus communis]
8 Hb_003878_110 0.103875683 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
9 Hb_000189_330 0.1053227682 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
10 Hb_001396_280 0.1082974831 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
11 Hb_007951_040 0.1087455019 - - signal peptidase family protein [Populus trichocarpa]
12 Hb_021943_080 0.1092512417 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
13 Hb_143629_150 0.1120546366 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
14 Hb_001143_180 0.1130305456 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
15 Hb_000101_380 0.1132475146 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
16 Hb_001123_030 0.1132514617 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_028308_010 0.114018773 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
18 Hb_001077_030 0.1140540113 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
19 Hb_002837_060 0.1142367371 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
20 Hb_000576_050 0.114269814 - - Kinase superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000243_160 Hb_000243_160 Hb_000983_170 Hb_000983_170 Hb_000243_160--Hb_000983_170 Hb_001418_040 Hb_001418_040 Hb_000243_160--Hb_001418_040 Hb_000031_280 Hb_000031_280 Hb_000243_160--Hb_000031_280 Hb_000034_080 Hb_000034_080 Hb_000243_160--Hb_000034_080 Hb_003688_090 Hb_003688_090 Hb_000243_160--Hb_003688_090 Hb_003038_120 Hb_003038_120 Hb_000243_160--Hb_003038_120 Hb_000983_170--Hb_003038_120 Hb_002837_060 Hb_002837_060 Hb_000983_170--Hb_002837_060 Hb_001396_280 Hb_001396_280 Hb_000983_170--Hb_001396_280 Hb_000983_170--Hb_000034_080 Hb_001077_030 Hb_001077_030 Hb_000983_170--Hb_001077_030 Hb_008556_030 Hb_008556_030 Hb_001418_040--Hb_008556_030 Hb_006960_050 Hb_006960_050 Hb_001418_040--Hb_006960_050 Hb_000576_050 Hb_000576_050 Hb_001418_040--Hb_000576_050 Hb_000101_380 Hb_000101_380 Hb_001418_040--Hb_000101_380 Hb_000414_050 Hb_000414_050 Hb_001418_040--Hb_000414_050 Hb_002836_140 Hb_002836_140 Hb_001418_040--Hb_002836_140 Hb_000031_280--Hb_008556_030 Hb_001163_120 Hb_001163_120 Hb_000031_280--Hb_001163_120 Hb_000599_080 Hb_000599_080 Hb_000031_280--Hb_000599_080 Hb_002681_170 Hb_002681_170 Hb_000031_280--Hb_002681_170 Hb_000031_290 Hb_000031_290 Hb_000031_280--Hb_000031_290 Hb_000031_280--Hb_001418_040 Hb_000034_080--Hb_003038_120 Hb_003897_040 Hb_003897_040 Hb_000034_080--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000034_080--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_000034_080--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_000034_080--Hb_007062_040 Hb_007413_040 Hb_007413_040 Hb_000034_080--Hb_007413_040 Hb_010150_020 Hb_010150_020 Hb_003688_090--Hb_010150_020 Hb_009049_020 Hb_009049_020 Hb_003688_090--Hb_009049_020 Hb_007951_040 Hb_007951_040 Hb_003688_090--Hb_007951_040 Hb_002073_190 Hb_002073_190 Hb_003688_090--Hb_002073_190 Hb_000035_110 Hb_000035_110 Hb_003688_090--Hb_000035_110 Hb_002398_030 Hb_002398_030 Hb_003688_090--Hb_002398_030 Hb_000776_100 Hb_000776_100 Hb_003038_120--Hb_000776_100 Hb_003038_120--Hb_003897_040 Hb_003038_120--Hb_032990_010 Hb_003038_120--Hb_003096_060 Hb_005460_050 Hb_005460_050 Hb_003038_120--Hb_005460_050 Hb_006588_070 Hb_006588_070 Hb_003038_120--Hb_006588_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.5801 4.42344 7.93245 6.42017 7.21473 6.73852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.73191 3.5166 1.23694 3.33629 4.52889

CAGE analysis