Hb_000281_060

Information

Type -
Description -
Location Contig281: 55056-59238
Sequence    

Annotation

kegg
ID rcu:RCOM_0342890
description Protein kinase APK1B, chloroplast precursor, putative
nr
ID XP_002523402.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9FM85
description Probable receptor-like protein kinase At5g56460 OS=Arabidopsis thaliana GN=At5g56460 PE=2 SV=1
trembl
ID B9SBN3
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0342890 PE=3 SV=1
Gene Ontology
ID GO:0009506
description probable receptor-like protein kinase at5g56460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29338: 56929-57051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_060 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_001474_040 0.1456454334 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
3 Hb_001266_070 0.1665884509 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
4 Hb_002498_050 0.1738215316 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
5 Hb_024074_020 0.185507701 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
6 Hb_017014_010 0.193946648 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
7 Hb_034507_040 0.200002479 - - peptide transporter, putative [Ricinus communis]
8 Hb_011287_040 0.2025008251 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
9 Hb_008054_050 0.2062525359 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
10 Hb_001518_070 0.206399464 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000053_030 0.2068124681 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
12 Hb_004225_110 0.2071432914 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
13 Hb_002046_150 0.2080878006 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
14 Hb_001217_040 0.2119344313 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
15 Hb_005293_020 0.212218834 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002611_030 0.2138107764 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
17 Hb_010964_020 0.2166037307 - - RNA helicase [Arabidopsis thaliana]
18 Hb_010003_010 0.2176775318 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
19 Hb_007632_100 0.2178302962 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
20 Hb_100137_010 0.2202427746 - - hypothetical protein JCGZ_17848 [Jatropha curcas]

Gene co-expression network

sample Hb_000281_060 Hb_000281_060 Hb_001474_040 Hb_001474_040 Hb_000281_060--Hb_001474_040 Hb_001266_070 Hb_001266_070 Hb_000281_060--Hb_001266_070 Hb_002498_050 Hb_002498_050 Hb_000281_060--Hb_002498_050 Hb_024074_020 Hb_024074_020 Hb_000281_060--Hb_024074_020 Hb_017014_010 Hb_017014_010 Hb_000281_060--Hb_017014_010 Hb_034507_040 Hb_034507_040 Hb_000281_060--Hb_034507_040 Hb_010812_110 Hb_010812_110 Hb_001474_040--Hb_010812_110 Hb_001474_040--Hb_002498_050 Hb_000818_100 Hb_000818_100 Hb_001474_040--Hb_000818_100 Hb_000844_030 Hb_000844_030 Hb_001474_040--Hb_000844_030 Hb_000226_070 Hb_000226_070 Hb_001474_040--Hb_000226_070 Hb_001266_070--Hb_002498_050 Hb_028707_080 Hb_028707_080 Hb_001266_070--Hb_028707_080 Hb_011942_060 Hb_011942_060 Hb_001266_070--Hb_011942_060 Hb_000077_290 Hb_000077_290 Hb_001266_070--Hb_000077_290 Hb_000230_180 Hb_000230_180 Hb_001266_070--Hb_000230_180 Hb_002498_050--Hb_000230_180 Hb_002498_050--Hb_028707_080 Hb_002192_030 Hb_002192_030 Hb_002498_050--Hb_002192_030 Hb_009851_050 Hb_009851_050 Hb_002498_050--Hb_009851_050 Hb_000091_060 Hb_000091_060 Hb_002498_050--Hb_000091_060 Hb_000890_230 Hb_000890_230 Hb_002498_050--Hb_000890_230 Hb_002046_150 Hb_002046_150 Hb_024074_020--Hb_002046_150 Hb_000002_480 Hb_000002_480 Hb_024074_020--Hb_000002_480 Hb_002660_110 Hb_002660_110 Hb_024074_020--Hb_002660_110 Hb_001008_200 Hb_001008_200 Hb_024074_020--Hb_001008_200 Hb_012651_010 Hb_012651_010 Hb_024074_020--Hb_012651_010 Hb_000172_510 Hb_000172_510 Hb_024074_020--Hb_000172_510 Hb_000889_100 Hb_000889_100 Hb_017014_010--Hb_000889_100 Hb_002611_030 Hb_002611_030 Hb_017014_010--Hb_002611_030 Hb_010003_010 Hb_010003_010 Hb_017014_010--Hb_010003_010 Hb_100137_010 Hb_100137_010 Hb_017014_010--Hb_100137_010 Hb_048702_010 Hb_048702_010 Hb_017014_010--Hb_048702_010 Hb_017014_010--Hb_000077_290 Hb_188313_010 Hb_188313_010 Hb_034507_040--Hb_188313_010 Hb_000311_040 Hb_000311_040 Hb_034507_040--Hb_000311_040 Hb_054865_160 Hb_054865_160 Hb_034507_040--Hb_054865_160 Hb_001217_010 Hb_001217_010 Hb_034507_040--Hb_001217_010 Hb_011287_040 Hb_011287_040 Hb_034507_040--Hb_011287_040 Hb_001247_030 Hb_001247_030 Hb_034507_040--Hb_001247_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77105 1.14764 1.96116 12.971 3.21508 4.8668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03426 0.483113 1.86095 0.243688 2.07196

CAGE analysis