Hb_011942_060

Information

Type -
Description -
Location Contig11942: 32130-32429
Sequence    

Annotation

kegg
ID pxb:103929454
description probable serine incorporator
nr
ID KDO36651.1
description hypothetical protein CISIN_1g028965mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DDF9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028965mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable serine incorporator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05742: 27581-32608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011942_060 0.0 - - hypothetical protein CISIN_1g028965mg [Citrus sinensis]
2 Hb_004466_060 0.1459222924 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
3 Hb_100137_010 0.1481044525 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
4 Hb_002603_050 0.158171991 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
5 Hb_000077_290 0.1603765532 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002477_050 0.1644076475 - - unnamed protein product [Coffea canephora]
7 Hb_003052_180 0.1687312354 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
8 Hb_003071_070 0.1696055187 - - sucrose synthase 3 [Hevea brasiliensis]
9 Hb_002760_050 0.1705286402 - - conserved hypothetical protein [Ricinus communis]
10 Hb_099116_010 0.1720913217 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009529_040 0.172124312 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
12 Hb_001266_070 0.1732665476 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
13 Hb_088163_010 0.1734956546 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
14 Hb_000004_010 0.1738799138 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
15 Hb_000032_070 0.1740577545 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
16 Hb_102591_010 0.1752615494 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
17 Hb_000720_080 0.1755360816 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
18 Hb_002490_010 0.1779787477 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
19 Hb_000028_600 0.1786352059 - - glutaredoxin-1, grx1, putative [Ricinus communis]
20 Hb_000429_050 0.180561237 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011942_060 Hb_011942_060 Hb_004466_060 Hb_004466_060 Hb_011942_060--Hb_004466_060 Hb_100137_010 Hb_100137_010 Hb_011942_060--Hb_100137_010 Hb_002603_050 Hb_002603_050 Hb_011942_060--Hb_002603_050 Hb_000077_290 Hb_000077_290 Hb_011942_060--Hb_000077_290 Hb_002477_050 Hb_002477_050 Hb_011942_060--Hb_002477_050 Hb_003052_180 Hb_003052_180 Hb_011942_060--Hb_003052_180 Hb_000053_030 Hb_000053_030 Hb_004466_060--Hb_000053_030 Hb_004466_060--Hb_100137_010 Hb_000168_010 Hb_000168_010 Hb_004466_060--Hb_000168_010 Hb_089202_010 Hb_089202_010 Hb_004466_060--Hb_089202_010 Hb_002611_030 Hb_002611_030 Hb_004466_060--Hb_002611_030 Hb_002562_110 Hb_002562_110 Hb_004466_060--Hb_002562_110 Hb_048702_010 Hb_048702_010 Hb_100137_010--Hb_048702_010 Hb_100137_010--Hb_002611_030 Hb_100137_010--Hb_000077_290 Hb_122636_010 Hb_122636_010 Hb_100137_010--Hb_122636_010 Hb_001217_010 Hb_001217_010 Hb_100137_010--Hb_001217_010 Hb_004881_030 Hb_004881_030 Hb_002603_050--Hb_004881_030 Hb_002603_050--Hb_003052_180 Hb_001104_130 Hb_001104_130 Hb_002603_050--Hb_001104_130 Hb_009661_030 Hb_009661_030 Hb_002603_050--Hb_009661_030 Hb_000004_020 Hb_000004_020 Hb_002603_050--Hb_000004_020 Hb_000032_070 Hb_000032_070 Hb_002603_050--Hb_000032_070 Hb_005170_010 Hb_005170_010 Hb_000077_290--Hb_005170_010 Hb_000230_180 Hb_000230_180 Hb_000077_290--Hb_000230_180 Hb_004525_040 Hb_004525_040 Hb_000077_290--Hb_004525_040 Hb_012194_060 Hb_012194_060 Hb_000077_290--Hb_012194_060 Hb_000035_330 Hb_000035_330 Hb_000077_290--Hb_000035_330 Hb_000889_100 Hb_000889_100 Hb_000077_290--Hb_000889_100 Hb_000215_310 Hb_000215_310 Hb_002477_050--Hb_000215_310 Hb_143629_130 Hb_143629_130 Hb_002477_050--Hb_143629_130 Hb_099116_010 Hb_099116_010 Hb_002477_050--Hb_099116_010 Hb_001195_160 Hb_001195_160 Hb_002477_050--Hb_001195_160 Hb_004709_020 Hb_004709_020 Hb_002477_050--Hb_004709_020 Hb_006629_010 Hb_006629_010 Hb_002477_050--Hb_006629_010 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_033152_070 Hb_033152_070 Hb_003052_180--Hb_033152_070 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_003052_180--Hb_004881_030 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.9107 28.1397 18.185 359.798 78.9053 121.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.9477 31.8416 46.5375 103.317 75.1134

CAGE analysis