Hb_000032_070

Information

Type -
Description -
Location Contig32: 54923-58553
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13760g
description POPTRDRAFT_554469; hypothetical protein
nr
ID XP_002303634.1
description hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
swissprot
ID O82509
description Protein trichome birefringence-like 23 OS=Arabidopsis thaliana GN=TBL23 PE=2 SV=1
trembl
ID B9GXG1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33694: 56451-56688 , PASA_asmbl_33695: 58138-58614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_070 0.0 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
2 Hb_009529_040 0.1062220023 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
3 Hb_002603_050 0.118457694 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
4 Hb_001018_110 0.1233140651 - - unnamed protein product [Coffea canephora]
5 Hb_002150_040 0.1233854276 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
6 Hb_003141_070 0.1278802318 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
7 Hb_002631_070 0.129021416 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
8 Hb_000735_110 0.1376237277 - - fk506-binding protein, putative [Ricinus communis]
9 Hb_001024_020 0.1380880521 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
10 Hb_002304_040 0.143261008 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
11 Hb_004129_140 0.1448654677 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
12 Hb_030827_070 0.1466449032 - - PREDICTED: transmembrane protein 161B [Jatropha curcas]
13 Hb_003994_280 0.1470600946 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
14 Hb_004935_060 0.1472994612 - - Uncharacterized protein isoform 2 [Theobroma cacao]
15 Hb_003929_270 0.1498994294 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
16 Hb_000062_540 0.1509803683 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007153_050 0.1524207613 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
18 Hb_044736_010 0.1527793351 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_008096_030 0.1540963879 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
20 Hb_000085_400 0.1549893642 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_070 Hb_000032_070 Hb_009529_040 Hb_009529_040 Hb_000032_070--Hb_009529_040 Hb_002603_050 Hb_002603_050 Hb_000032_070--Hb_002603_050 Hb_001018_110 Hb_001018_110 Hb_000032_070--Hb_001018_110 Hb_002150_040 Hb_002150_040 Hb_000032_070--Hb_002150_040 Hb_003141_070 Hb_003141_070 Hb_000032_070--Hb_003141_070 Hb_002631_070 Hb_002631_070 Hb_000032_070--Hb_002631_070 Hb_115107_010 Hb_115107_010 Hb_009529_040--Hb_115107_010 Hb_009529_040--Hb_001018_110 Hb_009529_040--Hb_002150_040 Hb_002611_020 Hb_002611_020 Hb_009529_040--Hb_002611_020 Hb_187953_010 Hb_187953_010 Hb_009529_040--Hb_187953_010 Hb_004881_030 Hb_004881_030 Hb_002603_050--Hb_004881_030 Hb_003052_180 Hb_003052_180 Hb_002603_050--Hb_003052_180 Hb_001104_130 Hb_001104_130 Hb_002603_050--Hb_001104_130 Hb_009661_030 Hb_009661_030 Hb_002603_050--Hb_009661_030 Hb_000004_020 Hb_000004_020 Hb_002603_050--Hb_000004_020 Hb_000300_630 Hb_000300_630 Hb_001018_110--Hb_000300_630 Hb_005023_010 Hb_005023_010 Hb_001018_110--Hb_005023_010 Hb_001018_130 Hb_001018_130 Hb_001018_110--Hb_001018_130 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_072922_010 Hb_072922_010 Hb_001018_110--Hb_072922_010 Hb_000159_090 Hb_000159_090 Hb_002150_040--Hb_000159_090 Hb_000140_280 Hb_000140_280 Hb_002150_040--Hb_000140_280 Hb_005218_020 Hb_005218_020 Hb_002150_040--Hb_005218_020 Hb_000069_210 Hb_000069_210 Hb_002150_040--Hb_000069_210 Hb_086085_020 Hb_086085_020 Hb_002150_040--Hb_086085_020 Hb_000136_100 Hb_000136_100 Hb_002150_040--Hb_000136_100 Hb_004935_060 Hb_004935_060 Hb_003141_070--Hb_004935_060 Hb_002304_040 Hb_002304_040 Hb_003141_070--Hb_002304_040 Hb_002735_050 Hb_002735_050 Hb_003141_070--Hb_002735_050 Hb_025098_010 Hb_025098_010 Hb_003141_070--Hb_025098_010 Hb_005144_050 Hb_005144_050 Hb_003141_070--Hb_005144_050 Hb_003529_030 Hb_003529_030 Hb_003141_070--Hb_003529_030 Hb_001640_030 Hb_001640_030 Hb_002631_070--Hb_001640_030 Hb_002631_070--Hb_003994_280 Hb_009851_050 Hb_009851_050 Hb_002631_070--Hb_009851_050 Hb_000579_240 Hb_000579_240 Hb_002631_070--Hb_000579_240 Hb_000004_030 Hb_000004_030 Hb_002631_070--Hb_000004_030 Hb_004680_120 Hb_004680_120 Hb_002631_070--Hb_004680_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30886 0.35618 0.61544 5.14495 2.06093 2.95423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94541 1.12235 2.63249 1.7215 2.39805

CAGE analysis