Hb_158384_010

Information

Type -
Description -
Location Contig158384: 1742-2081
Sequence    

Annotation

kegg
ID rcu:RCOM_0261900
description poly(A) polymerase, putative (EC:2.7.7.25)
nr
ID XP_002533879.1
description poly(A) polymerase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6L0
description Poly(A) polymerase, putative OS=Ricinus communis GN=RCOM_0261900 PE=3 SV=1
Gene Ontology
ID GO:0005739
description cca trna nucleotidyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158384_010 0.0 - - poly(A) polymerase, putative [Ricinus communis]
2 Hb_001762_050 0.231654406 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
3 Hb_005048_110 0.2512456686 - - -
4 Hb_003768_060 0.2614822061 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
5 Hb_001135_110 0.2669727865 - - -
6 Hb_006775_070 0.2716377266 - - zinc finger protein, putative [Ricinus communis]
7 Hb_003902_060 0.2718869958 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
8 Hb_000045_280 0.2728464376 - - hypothetical protein JCGZ_04076 [Jatropha curcas]
9 Hb_000521_180 0.2749254337 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
10 Hb_000732_030 0.2754844982 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001775_090 0.2778809815 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
12 Hb_001486_210 0.2788044889 - - -
13 Hb_126648_010 0.2835090605 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
14 Hb_005276_030 0.2847836414 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
15 Hb_013834_010 0.2856553223 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
16 Hb_000787_010 0.2858961823 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
17 Hb_047560_010 0.2871592527 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
18 Hb_005273_020 0.2896100848 - - -
19 Hb_028639_040 0.2945895373 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
20 Hb_003529_180 0.2977001802 - - hypothetical protein JCGZ_00222 [Jatropha curcas]

Gene co-expression network

sample Hb_158384_010 Hb_158384_010 Hb_001762_050 Hb_001762_050 Hb_158384_010--Hb_001762_050 Hb_005048_110 Hb_005048_110 Hb_158384_010--Hb_005048_110 Hb_003768_060 Hb_003768_060 Hb_158384_010--Hb_003768_060 Hb_001135_110 Hb_001135_110 Hb_158384_010--Hb_001135_110 Hb_006775_070 Hb_006775_070 Hb_158384_010--Hb_006775_070 Hb_003902_060 Hb_003902_060 Hb_158384_010--Hb_003902_060 Hb_183719_010 Hb_183719_010 Hb_001762_050--Hb_183719_010 Hb_007894_100 Hb_007894_100 Hb_001762_050--Hb_007894_100 Hb_003861_030 Hb_003861_030 Hb_001762_050--Hb_003861_030 Hb_034310_010 Hb_034310_010 Hb_001762_050--Hb_034310_010 Hb_028639_040 Hb_028639_040 Hb_001762_050--Hb_028639_040 Hb_005332_130 Hb_005332_130 Hb_001762_050--Hb_005332_130 Hb_126648_010 Hb_126648_010 Hb_005048_110--Hb_126648_010 Hb_002321_040 Hb_002321_040 Hb_005048_110--Hb_002321_040 Hb_011609_040 Hb_011609_040 Hb_005048_110--Hb_011609_040 Hb_001329_170 Hb_001329_170 Hb_005048_110--Hb_001329_170 Hb_001329_190 Hb_001329_190 Hb_005048_110--Hb_001329_190 Hb_002397_060 Hb_002397_060 Hb_005048_110--Hb_002397_060 Hb_000787_010 Hb_000787_010 Hb_003768_060--Hb_000787_010 Hb_002447_160 Hb_002447_160 Hb_003768_060--Hb_002447_160 Hb_003768_060--Hb_028639_040 Hb_004021_090 Hb_004021_090 Hb_003768_060--Hb_004021_090 Hb_099990_030 Hb_099990_030 Hb_003768_060--Hb_099990_030 Hb_000732_030 Hb_000732_030 Hb_001135_110--Hb_000732_030 Hb_002498_240 Hb_002498_240 Hb_001135_110--Hb_002498_240 Hb_000959_190 Hb_000959_190 Hb_001135_110--Hb_000959_190 Hb_001123_110 Hb_001123_110 Hb_001135_110--Hb_001123_110 Hb_013834_010 Hb_013834_010 Hb_001135_110--Hb_013834_010 Hb_003747_050 Hb_003747_050 Hb_001135_110--Hb_003747_050 Hb_176472_020 Hb_176472_020 Hb_006775_070--Hb_176472_020 Hb_006775_070--Hb_000959_190 Hb_000260_610 Hb_000260_610 Hb_006775_070--Hb_000260_610 Hb_012787_030 Hb_012787_030 Hb_006775_070--Hb_012787_030 Hb_006775_070--Hb_000732_030 Hb_002518_200 Hb_002518_200 Hb_006775_070--Hb_002518_200 Hb_078568_010 Hb_078568_010 Hb_003902_060--Hb_078568_010 Hb_100105_010 Hb_100105_010 Hb_003902_060--Hb_100105_010 Hb_000731_230 Hb_000731_230 Hb_003902_060--Hb_000731_230 Hb_075230_010 Hb_075230_010 Hb_003902_060--Hb_075230_010 Hb_000099_090 Hb_000099_090 Hb_003902_060--Hb_000099_090 Hb_000045_280 Hb_000045_280 Hb_003902_060--Hb_000045_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.6171 32.1194 100.985 42.4561 3.41669 9.14961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3044 4.05213 0 0 0

CAGE analysis