Hb_001762_050

Information

Type -
Description -
Location Contig1762: 46705-49071
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21740g
description XYLEM CYSTEINE PEPTIDASE 1 family protein
nr
ID XP_012074410.1
description PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
swissprot
ID O65493
description Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1
trembl
ID A0A067LQY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10746 PE=3 SV=1
Gene Ontology
ID GO:0000325
description xylem cysteine proteinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001762_050 0.0 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
2 Hb_183719_010 0.1897635429 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
3 Hb_007894_100 0.2047216636 - - PREDICTED: uncharacterized protein LOC105632952 [Jatropha curcas]
4 Hb_003861_030 0.2137034467 - - hypothetical protein JCGZ_16321 [Jatropha curcas]
5 Hb_034310_010 0.2175405418 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
6 Hb_028639_040 0.2189143424 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
7 Hb_005332_130 0.2254841754 - - Mavicyanin, putative [Ricinus communis]
8 Hb_047560_010 0.2296203508 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
9 Hb_158384_010 0.231654406 - - poly(A) polymerase, putative [Ricinus communis]
10 Hb_001775_090 0.2469914049 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
11 Hb_000362_140 0.2577370477 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
12 Hb_000577_050 0.2594389007 - - -
13 Hb_000193_060 0.2627020533 - - PREDICTED: F-box protein At4g35930 [Jatropha curcas]
14 Hb_000540_200 0.263281347 - - Uncharacterized protein TCM_041994 [Theobroma cacao]
15 Hb_005276_030 0.2666647128 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
16 Hb_002343_030 0.2669307522 - - conserved hypothetical protein [Ricinus communis]
17 Hb_130222_010 0.269384808 - - hypothetical protein RCOM_1272620 [Ricinus communis]
18 Hb_008250_020 0.2701399325 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
19 Hb_004021_090 0.270628949 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
20 Hb_007413_020 0.2712372899 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001762_050 Hb_001762_050 Hb_183719_010 Hb_183719_010 Hb_001762_050--Hb_183719_010 Hb_007894_100 Hb_007894_100 Hb_001762_050--Hb_007894_100 Hb_003861_030 Hb_003861_030 Hb_001762_050--Hb_003861_030 Hb_034310_010 Hb_034310_010 Hb_001762_050--Hb_034310_010 Hb_028639_040 Hb_028639_040 Hb_001762_050--Hb_028639_040 Hb_005332_130 Hb_005332_130 Hb_001762_050--Hb_005332_130 Hb_004449_160 Hb_004449_160 Hb_183719_010--Hb_004449_160 Hb_000164_030 Hb_000164_030 Hb_183719_010--Hb_000164_030 Hb_183719_010--Hb_007894_100 Hb_064971_010 Hb_064971_010 Hb_183719_010--Hb_064971_010 Hb_000739_250 Hb_000739_250 Hb_183719_010--Hb_000739_250 Hb_006142_020 Hb_006142_020 Hb_183719_010--Hb_006142_020 Hb_000256_170 Hb_000256_170 Hb_007894_100--Hb_000256_170 Hb_000574_180 Hb_000574_180 Hb_007894_100--Hb_000574_180 Hb_000397_140 Hb_000397_140 Hb_007894_100--Hb_000397_140 Hb_000193_060 Hb_000193_060 Hb_007894_100--Hb_000193_060 Hb_006060_010 Hb_006060_010 Hb_007894_100--Hb_006060_010 Hb_000261_340 Hb_000261_340 Hb_007894_100--Hb_000261_340 Hb_003861_030--Hb_183719_010 Hb_002701_230 Hb_002701_230 Hb_003861_030--Hb_002701_230 Hb_000367_240 Hb_000367_240 Hb_003861_030--Hb_000367_240 Hb_011360_130 Hb_011360_130 Hb_003861_030--Hb_011360_130 Hb_001279_050 Hb_001279_050 Hb_003861_030--Hb_001279_050 Hb_032202_130 Hb_032202_130 Hb_034310_010--Hb_032202_130 Hb_000083_110 Hb_000083_110 Hb_034310_010--Hb_000083_110 Hb_123475_020 Hb_123475_020 Hb_034310_010--Hb_123475_020 Hb_011161_030 Hb_011161_030 Hb_034310_010--Hb_011161_030 Hb_173029_030 Hb_173029_030 Hb_034310_010--Hb_173029_030 Hb_004495_010 Hb_004495_010 Hb_034310_010--Hb_004495_010 Hb_028639_040--Hb_123475_020 Hb_004021_090 Hb_004021_090 Hb_028639_040--Hb_004021_090 Hb_000787_010 Hb_000787_010 Hb_028639_040--Hb_000787_010 Hb_002874_210 Hb_002874_210 Hb_028639_040--Hb_002874_210 Hb_003768_060 Hb_003768_060 Hb_028639_040--Hb_003768_060 Hb_007382_090 Hb_007382_090 Hb_005332_130--Hb_007382_090 Hb_000808_120 Hb_000808_120 Hb_005332_130--Hb_000808_120 Hb_001775_090 Hb_001775_090 Hb_005332_130--Hb_001775_090 Hb_000577_050 Hb_000577_050 Hb_005332_130--Hb_000577_050 Hb_005332_130--Hb_007894_100 Hb_003119_040 Hb_003119_040 Hb_005332_130--Hb_003119_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0553366 0.0541112 0.261289 0.105373 0 0.0150399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis