Hb_003768_060

Information

Type -
Description -
Location Contig3768: 62141-63646
Sequence    

Annotation

kegg
ID gmx:548070
description TFIIB1; transcription factor TFIIB
nr
ID XP_012084856.1
description PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
swissprot
ID P48513
description Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1
trembl
ID A0A067JTH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19935 PE=4 SV=1
Gene Ontology
ID GO:0008270
description transcription initiation factor iib-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003768_060 0.0 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
2 Hb_000787_010 0.1910981813 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
3 Hb_002447_160 0.2047405367 - - -
4 Hb_028639_040 0.2341585978 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
5 Hb_158384_010 0.2614822061 - - poly(A) polymerase, putative [Ricinus communis]
6 Hb_004021_090 0.2637156553 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
7 Hb_099990_030 0.2701592028 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_000589_370 0.2854326442 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
9 Hb_001486_210 0.3000119621 - - -
10 Hb_002234_230 0.3000373627 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
11 Hb_001762_050 0.3049321841 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
12 Hb_122259_010 0.3093916336 - - -
13 Hb_171062_010 0.3112302478 - - hypothetical protein VITISV_036059 [Vitis vinifera]
14 Hb_003292_060 0.3137619775 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
15 Hb_002235_180 0.3153408007 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
16 Hb_000045_280 0.315663363 - - hypothetical protein JCGZ_04076 [Jatropha curcas]
17 Hb_047560_010 0.3223456808 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
18 Hb_059481_010 0.3235018845 - - hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
19 Hb_001004_050 0.3276563001 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
20 Hb_004524_060 0.3282938299 - - hypothetical protein VITISV_039334 [Vitis vinifera]

Gene co-expression network

sample Hb_003768_060 Hb_003768_060 Hb_000787_010 Hb_000787_010 Hb_003768_060--Hb_000787_010 Hb_002447_160 Hb_002447_160 Hb_003768_060--Hb_002447_160 Hb_028639_040 Hb_028639_040 Hb_003768_060--Hb_028639_040 Hb_158384_010 Hb_158384_010 Hb_003768_060--Hb_158384_010 Hb_004021_090 Hb_004021_090 Hb_003768_060--Hb_004021_090 Hb_099990_030 Hb_099990_030 Hb_003768_060--Hb_099990_030 Hb_000787_010--Hb_099990_030 Hb_000787_010--Hb_004021_090 Hb_000787_010--Hb_028639_040 Hb_000589_370 Hb_000589_370 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180 Hb_001004_050 Hb_001004_050 Hb_002447_160--Hb_001004_050 Hb_002631_220 Hb_002631_220 Hb_002447_160--Hb_002631_220 Hb_059481_010 Hb_059481_010 Hb_002447_160--Hb_059481_010 Hb_002447_160--Hb_000787_010 Hb_002447_160--Hb_004021_090 Hb_123475_020 Hb_123475_020 Hb_028639_040--Hb_123475_020 Hb_028639_040--Hb_004021_090 Hb_001762_050 Hb_001762_050 Hb_028639_040--Hb_001762_050 Hb_002874_210 Hb_002874_210 Hb_028639_040--Hb_002874_210 Hb_158384_010--Hb_001762_050 Hb_005048_110 Hb_005048_110 Hb_158384_010--Hb_005048_110 Hb_001135_110 Hb_001135_110 Hb_158384_010--Hb_001135_110 Hb_006775_070 Hb_006775_070 Hb_158384_010--Hb_006775_070 Hb_003902_060 Hb_003902_060 Hb_158384_010--Hb_003902_060 Hb_009979_010 Hb_009979_010 Hb_004021_090--Hb_009979_010 Hb_001486_210 Hb_001486_210 Hb_004021_090--Hb_001486_210 Hb_183192_010 Hb_183192_010 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030 Hb_004968_010 Hb_004968_010 Hb_099990_030--Hb_004968_010 Hb_004524_070 Hb_004524_070 Hb_099990_030--Hb_004524_070 Hb_167508_010 Hb_167508_010 Hb_099990_030--Hb_167508_010 Hb_061466_020 Hb_061466_020 Hb_099990_030--Hb_061466_020 Hb_161023_010 Hb_161023_010 Hb_099990_030--Hb_161023_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.246525 0.153204 0.346222 0.0886391 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0403589 0 0 0

CAGE analysis