Hb_002874_210

Information

Type -
Description -
Location Contig2874: 164932-170213
Sequence    

Annotation

kegg
ID rcu:RCOM_0953390
description hypothetical protein
nr
ID XP_002515858.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQ39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0953390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30011: 164981-165340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_123475_020 0.1498917292 - - -
3 Hb_000340_070 0.1505925342 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
4 Hb_000574_270 0.1514088312 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
5 Hb_000604_080 0.1668357019 - - Fgenesh protein [Medicago truncatula]
6 Hb_000953_180 0.1711077536 - - -
7 Hb_000365_110 0.1785169215 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
8 Hb_127372_010 0.1812913166 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
9 Hb_000483_050 0.181778445 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
10 Hb_006478_140 0.1817927791 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
11 Hb_150745_010 0.1819200761 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
12 Hb_002435_010 0.1825949951 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
13 Hb_007101_250 0.1934349579 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
14 Hb_000668_190 0.1982419511 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
15 Hb_000413_220 0.2009413874 - - PREDICTED: kinesin-1 [Jatropha curcas]
16 Hb_002534_040 0.2034462937 - - Calmodulin, putative [Ricinus communis]
17 Hb_004650_040 0.2039621535 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
18 Hb_000192_030 0.2046734386 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
19 Hb_008115_030 0.2075605558 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
20 Hb_000042_020 0.2119945578 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002874_210 Hb_002874_210 Hb_123475_020 Hb_123475_020 Hb_002874_210--Hb_123475_020 Hb_000340_070 Hb_000340_070 Hb_002874_210--Hb_000340_070 Hb_000574_270 Hb_000574_270 Hb_002874_210--Hb_000574_270 Hb_000604_080 Hb_000604_080 Hb_002874_210--Hb_000604_080 Hb_000953_180 Hb_000953_180 Hb_002874_210--Hb_000953_180 Hb_000365_110 Hb_000365_110 Hb_002874_210--Hb_000365_110 Hb_034310_010 Hb_034310_010 Hb_123475_020--Hb_034310_010 Hb_028639_040 Hb_028639_040 Hb_123475_020--Hb_028639_040 Hb_004495_010 Hb_004495_010 Hb_123475_020--Hb_004495_010 Hb_107174_010 Hb_107174_010 Hb_123475_020--Hb_107174_010 Hb_005686_100 Hb_005686_100 Hb_123475_020--Hb_005686_100 Hb_002534_040 Hb_002534_040 Hb_000340_070--Hb_002534_040 Hb_000340_070--Hb_000604_080 Hb_002435_010 Hb_002435_010 Hb_000340_070--Hb_002435_010 Hb_000340_070--Hb_000574_270 Hb_150745_010 Hb_150745_010 Hb_000340_070--Hb_150745_010 Hb_000668_190 Hb_000668_190 Hb_000340_070--Hb_000668_190 Hb_000574_270--Hb_000365_110 Hb_000574_270--Hb_000953_180 Hb_000483_050 Hb_000483_050 Hb_000574_270--Hb_000483_050 Hb_000574_270--Hb_150745_010 Hb_000192_030 Hb_000192_030 Hb_000574_270--Hb_000192_030 Hb_000413_220 Hb_000413_220 Hb_000574_270--Hb_000413_220 Hb_006478_140 Hb_006478_140 Hb_000604_080--Hb_006478_140 Hb_127372_010 Hb_127372_010 Hb_000604_080--Hb_127372_010 Hb_038601_010 Hb_038601_010 Hb_000604_080--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_000604_080--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_000604_080--Hb_004725_040 Hb_000953_180--Hb_000192_030 Hb_000953_180--Hb_000365_110 Hb_100395_010 Hb_100395_010 Hb_000953_180--Hb_100395_010 Hb_008948_070 Hb_008948_070 Hb_000953_180--Hb_008948_070 Hb_000953_180--Hb_000483_050 Hb_000365_110--Hb_000483_050 Hb_000365_110--Hb_100395_010 Hb_000365_110--Hb_000192_030 Hb_000365_110--Hb_008948_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0118118 0.0625291 0.215442 0.0277031 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0168532 0

CAGE analysis