Hb_010913_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig10913: 1504-6331
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09760g
description hypothetical protein
nr
ID XP_012071293.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067JE77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25958 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02790: 1571-2794 , PASA_asmbl_02791: 2925-4237 , PASA_asmbl_02792: 4259-7599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010913_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_155541_010 0.1954391829 - - -
3 Hb_006907_100 0.2284990461 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
4 Hb_000099_230 0.2383952432 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
5 Hb_011485_090 0.2417314093 - - -
6 Hb_004846_100 0.2425946532 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
7 Hb_118228_010 0.2430093625 - - PREDICTED: pirin-like protein [Jatropha curcas]
8 Hb_089140_010 0.2484219885 - - -
9 Hb_011689_130 0.2487744227 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
10 Hb_000302_130 0.2520736036 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
11 Hb_008096_040 0.2591127136 - - hypothetical protein PRUPE_ppa001351mg [Prunus persica]
12 Hb_000567_040 0.2638785907 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
13 Hb_148891_010 0.2651776371 - - -
14 Hb_000743_030 0.2686309597 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
15 Hb_000445_190 0.2696958898 - - -
16 Hb_009976_010 0.2724308798 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
17 Hb_100105_010 0.272890854 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
18 Hb_000826_060 0.2760524717 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_003676_030 0.279804192 - - PREDICTED: cyclin-L1-1-like [Populus euphratica]
20 Hb_005928_050 0.2799310654 - - glutathione reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_010913_010 Hb_010913_010 Hb_155541_010 Hb_155541_010 Hb_010913_010--Hb_155541_010 Hb_006907_100 Hb_006907_100 Hb_010913_010--Hb_006907_100 Hb_000099_230 Hb_000099_230 Hb_010913_010--Hb_000099_230 Hb_011485_090 Hb_011485_090 Hb_010913_010--Hb_011485_090 Hb_004846_100 Hb_004846_100 Hb_010913_010--Hb_004846_100 Hb_118228_010 Hb_118228_010 Hb_010913_010--Hb_118228_010 Hb_155541_010--Hb_011485_090 Hb_155541_010--Hb_118228_010 Hb_005928_050 Hb_005928_050 Hb_155541_010--Hb_005928_050 Hb_000302_130 Hb_000302_130 Hb_155541_010--Hb_000302_130 Hb_155541_010--Hb_006907_100 Hb_006907_100--Hb_000302_130 Hb_000743_030 Hb_000743_030 Hb_006907_100--Hb_000743_030 Hb_005000_250 Hb_005000_250 Hb_006907_100--Hb_005000_250 Hb_000122_050 Hb_000122_050 Hb_006907_100--Hb_000122_050 Hb_006907_100--Hb_005928_050 Hb_127008_010 Hb_127008_010 Hb_000099_230--Hb_127008_010 Hb_069022_010 Hb_069022_010 Hb_000099_230--Hb_069022_010 Hb_014783_010 Hb_014783_010 Hb_000099_230--Hb_014783_010 Hb_000445_190 Hb_000445_190 Hb_000099_230--Hb_000445_190 Hb_003371_180 Hb_003371_180 Hb_000099_230--Hb_003371_180 Hb_008667_040 Hb_008667_040 Hb_000099_230--Hb_008667_040 Hb_011485_090--Hb_118228_010 Hb_000926_230 Hb_000926_230 Hb_011485_090--Hb_000926_230 Hb_011485_090--Hb_006907_100 Hb_011485_090--Hb_000302_130 Hb_089140_120 Hb_089140_120 Hb_011485_090--Hb_089140_120 Hb_004846_100--Hb_155541_010 Hb_001862_120 Hb_001862_120 Hb_004846_100--Hb_001862_120 Hb_004846_100--Hb_000743_030 Hb_000275_020 Hb_000275_020 Hb_004846_100--Hb_000275_020 Hb_001005_160 Hb_001005_160 Hb_004846_100--Hb_001005_160 Hb_001828_100 Hb_001828_100 Hb_118228_010--Hb_001828_100 Hb_074836_010 Hb_074836_010 Hb_118228_010--Hb_074836_010 Hb_000261_170 Hb_000261_170 Hb_118228_010--Hb_000261_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93684 12.1453 9.77183 12.6357 8.65249 0.472958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0529 10.9415 0 0.0517712 0.0644439

CAGE analysis