Hb_000275_020

Information

Type -
Description -
Location Contig275: 23352-24251
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01080g
description hypothetical protein
nr
ID XP_012070486.1
description PREDICTED: uncharacterized protein LOC105632656 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02752 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000275_020 0.0 - - PREDICTED: uncharacterized protein LOC105632656 [Jatropha curcas]
2 Hb_060715_010 0.1987522257 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
3 Hb_006788_120 0.2226136131 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
4 Hb_012120_030 0.223457363 - - -
5 Hb_023732_060 0.2247078527 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
6 Hb_000010_210 0.2251378197 - - PREDICTED: centromere protein X [Jatropha curcas]
7 Hb_000224_200 0.2285868331 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
8 Hb_155541_010 0.2301909896 - - -
9 Hb_000264_290 0.2324452894 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
10 Hb_000186_190 0.2327398182 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
11 Hb_000635_140 0.2350707912 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
12 Hb_182964_010 0.2353445147 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
13 Hb_116608_010 0.2359848458 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
14 Hb_001288_030 0.2374488557 - - -
15 Hb_000243_040 0.2385010379 - - -
16 Hb_003206_120 0.2396955894 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
17 Hb_000302_130 0.2398476809 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
18 Hb_000363_330 0.2398992133 - - -
19 Hb_005143_040 0.2417283916 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
20 Hb_001047_240 0.2421898507 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]

Gene co-expression network

sample Hb_000275_020 Hb_000275_020 Hb_060715_010 Hb_060715_010 Hb_000275_020--Hb_060715_010 Hb_006788_120 Hb_006788_120 Hb_000275_020--Hb_006788_120 Hb_012120_030 Hb_012120_030 Hb_000275_020--Hb_012120_030 Hb_023732_060 Hb_023732_060 Hb_000275_020--Hb_023732_060 Hb_000010_210 Hb_000010_210 Hb_000275_020--Hb_000010_210 Hb_000224_200 Hb_000224_200 Hb_000275_020--Hb_000224_200 Hb_005143_040 Hb_005143_040 Hb_060715_010--Hb_005143_040 Hb_000416_070 Hb_000416_070 Hb_060715_010--Hb_000416_070 Hb_000003_540 Hb_000003_540 Hb_060715_010--Hb_000003_540 Hb_012760_130 Hb_012760_130 Hb_060715_010--Hb_012760_130 Hb_184570_010 Hb_184570_010 Hb_060715_010--Hb_184570_010 Hb_003994_270 Hb_003994_270 Hb_060715_010--Hb_003994_270 Hb_003038_210 Hb_003038_210 Hb_006788_120--Hb_003038_210 Hb_006788_120--Hb_000416_070 Hb_020400_030 Hb_020400_030 Hb_006788_120--Hb_020400_030 Hb_003498_090 Hb_003498_090 Hb_006788_120--Hb_003498_090 Hb_007101_300 Hb_007101_300 Hb_006788_120--Hb_007101_300 Hb_000009_240 Hb_000009_240 Hb_006788_120--Hb_000009_240 Hb_000186_190 Hb_000186_190 Hb_012120_030--Hb_000186_190 Hb_007123_060 Hb_007123_060 Hb_012120_030--Hb_007123_060 Hb_000264_290 Hb_000264_290 Hb_012120_030--Hb_000264_290 Hb_000106_130 Hb_000106_130 Hb_012120_030--Hb_000106_130 Hb_000302_130 Hb_000302_130 Hb_012120_030--Hb_000302_130 Hb_064264_010 Hb_064264_010 Hb_012120_030--Hb_064264_010 Hb_000656_340 Hb_000656_340 Hb_023732_060--Hb_000656_340 Hb_021924_010 Hb_021924_010 Hb_023732_060--Hb_021924_010 Hb_003226_220 Hb_003226_220 Hb_023732_060--Hb_003226_220 Hb_000975_180 Hb_000975_180 Hb_023732_060--Hb_000975_180 Hb_003988_040 Hb_003988_040 Hb_023732_060--Hb_003988_040 Hb_023386_010 Hb_023386_010 Hb_023732_060--Hb_023386_010 Hb_001019_080 Hb_001019_080 Hb_000010_210--Hb_001019_080 Hb_007432_080 Hb_007432_080 Hb_000010_210--Hb_007432_080 Hb_002289_120 Hb_002289_120 Hb_000010_210--Hb_002289_120 Hb_000010_210--Hb_000186_190 Hb_086703_010 Hb_086703_010 Hb_000010_210--Hb_086703_010 Hb_003878_010 Hb_003878_010 Hb_000010_210--Hb_003878_010 Hb_014783_010 Hb_014783_010 Hb_000224_200--Hb_014783_010 Hb_002809_130 Hb_002809_130 Hb_000224_200--Hb_002809_130 Hb_000167_060 Hb_000167_060 Hb_000224_200--Hb_000167_060 Hb_019249_010 Hb_019249_010 Hb_000224_200--Hb_019249_010 Hb_003371_180 Hb_003371_180 Hb_000224_200--Hb_003371_180 Hb_002900_160 Hb_002900_160 Hb_000224_200--Hb_002900_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.921438 5.02575 2.52456 8.10399 3.4756 4.29288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.14 7.05588 1.24745 1.52366 0.092369

CAGE analysis