Hb_020400_030

Information

Type -
Description -
Location Contig20400: 14833-21095
Sequence    

Annotation

kegg
ID rcu:RCOM_0340260
description hypothetical protein
nr
ID XP_012084712.1
description PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
swissprot
ID Q9VUQ8
description DCN1-like protein OS=Drosophila melanogaster GN=CG7427 PE=2 SV=2
trembl
ID A0A067JTC5
description Defective in cullin neddylation protein OS=Jatropha curcas GN=JCGZ_19856 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20913: 15118-15480 , PASA_asmbl_20914: 15493-17602 , PASA_asmbl_20915: 14272-20922 , PASA_asmbl_20916: 14889-17602 , PASA_asmbl_20917: 16711-20915 , PASA_asmbl_20919: 16711-20915 , PASA_asmbl_20920: 16219-16386
cDNA
(Sanger)
(ID:Location)		 039_K04.ab1: 16996-20915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020400_030 0.0 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
2 Hb_000363_500 0.09355407 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
3 Hb_002774_060 0.0987262515 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
4 Hb_000045_090 0.1001073018 - - PREDICTED: syntaxin-31 [Jatropha curcas]
5 Hb_003847_080 0.103793339 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
6 Hb_022250_130 0.1075305456 - - inositol hexaphosphate kinase, putative [Ricinus communis]
7 Hb_000107_310 0.1086586583 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
8 Hb_005862_010 0.1102366007 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
9 Hb_000608_030 0.1108569452 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
10 Hb_002616_050 0.1113420134 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
11 Hb_010504_020 0.1116649474 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_001102_140 0.1117476348 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
13 Hb_185830_020 0.1117965296 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_009557_070 0.1119598198 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000953_020 0.1121421936 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
16 Hb_000700_110 0.1124783003 - - Vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_004072_020 0.1126244654 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
18 Hb_012305_050 0.1154737985 - - unnamed protein product [Coffea canephora]
19 Hb_000347_200 0.1156129212 - - lsm1, putative [Ricinus communis]
20 Hb_004324_310 0.1157219668 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_020400_030 Hb_020400_030 Hb_000363_500 Hb_000363_500 Hb_020400_030--Hb_000363_500 Hb_002774_060 Hb_002774_060 Hb_020400_030--Hb_002774_060 Hb_000045_090 Hb_000045_090 Hb_020400_030--Hb_000045_090 Hb_003847_080 Hb_003847_080 Hb_020400_030--Hb_003847_080 Hb_022250_130 Hb_022250_130 Hb_020400_030--Hb_022250_130 Hb_000107_310 Hb_000107_310 Hb_020400_030--Hb_000107_310 Hb_002616_050 Hb_002616_050 Hb_000363_500--Hb_002616_050 Hb_000363_500--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_000363_500--Hb_002078_150 Hb_004128_190 Hb_004128_190 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_005063_040 Hb_005063_040 Hb_000363_500--Hb_005063_040 Hb_002774_060--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_002774_060--Hb_000329_030 Hb_000656_040 Hb_000656_040 Hb_002774_060--Hb_000656_040 Hb_004324_310 Hb_004324_310 Hb_002774_060--Hb_004324_310 Hb_010172_080 Hb_010172_080 Hb_002774_060--Hb_010172_080 Hb_032208_090 Hb_032208_090 Hb_002774_060--Hb_032208_090 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000045_090--Hb_000329_030 Hb_004545_060 Hb_004545_060 Hb_000045_090--Hb_004545_060 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_012305_050 Hb_012305_050 Hb_003847_080--Hb_012305_050 Hb_003847_080--Hb_004128_190 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_003847_080--Hb_002078_150 Hb_022250_130--Hb_185830_020 Hb_022250_130--Hb_012305_050 Hb_000103_180 Hb_000103_180 Hb_022250_130--Hb_000103_180 Hb_022250_130--Hb_003847_080 Hb_006332_010 Hb_006332_010 Hb_022250_130--Hb_006332_010 Hb_010691_060 Hb_010691_060 Hb_022250_130--Hb_010691_060 Hb_003125_010 Hb_003125_010 Hb_000107_310--Hb_003125_010 Hb_003092_030 Hb_003092_030 Hb_000107_310--Hb_003092_030 Hb_006198_080 Hb_006198_080 Hb_000107_310--Hb_006198_080 Hb_000656_110 Hb_000656_110 Hb_000107_310--Hb_000656_110 Hb_002759_060 Hb_002759_060 Hb_000107_310--Hb_002759_060 Hb_180301_010 Hb_180301_010 Hb_000107_310--Hb_180301_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9141 13.9882 13.8158 18.4804 23.4705 48.7283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.6905 24.348 28.5698 12.3188 7.17748

CAGE analysis