Hb_000656_110

Information

Type -
Description -
Location Contig656: 64894-70512
Sequence    

Annotation

kegg
ID rcu:RCOM_0684960
description nucleolysin tia-1, putative
nr
ID XP_002529199.1
description nucleolysin tia-1, putative [Ricinus communis]
swissprot
ID Q9LJH8
description Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1
trembl
ID B9ST80
description Nucleolysin tia-1, putative OS=Ricinus communis GN=RCOM_0684960 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleolysin tiar

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52714: 64951-70448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_110 0.0 - - nucleolysin tia-1, putative [Ricinus communis]
2 Hb_093084_050 0.0448014726 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
3 Hb_000041_050 0.0626741533 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
4 Hb_001102_140 0.073965275 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
5 Hb_000700_110 0.0808143291 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_003125_010 0.0812415726 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
7 Hb_001369_690 0.0812788602 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
8 Hb_001898_220 0.08309861 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
9 Hb_004218_110 0.0834224754 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
10 Hb_001635_060 0.0834448579 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
11 Hb_000976_410 0.084872845 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
12 Hb_000125_190 0.0857459687 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
13 Hb_007441_120 0.0858933189 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
14 Hb_000445_420 0.0863034133 - - protein transporter, putative [Ricinus communis]
15 Hb_000107_310 0.087538703 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
16 Hb_002477_330 0.0902455063 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
17 Hb_001833_110 0.0903016058 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005305_080 0.0908544786 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
19 Hb_000409_020 0.0920363565 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
20 Hb_007044_140 0.0927478337 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]

Gene co-expression network

sample Hb_000656_110 Hb_000656_110 Hb_093084_050 Hb_093084_050 Hb_000656_110--Hb_093084_050 Hb_000041_050 Hb_000041_050 Hb_000656_110--Hb_000041_050 Hb_001102_140 Hb_001102_140 Hb_000656_110--Hb_001102_140 Hb_000700_110 Hb_000700_110 Hb_000656_110--Hb_000700_110 Hb_003125_010 Hb_003125_010 Hb_000656_110--Hb_003125_010 Hb_001369_690 Hb_001369_690 Hb_000656_110--Hb_001369_690 Hb_093084_050--Hb_001102_140 Hb_001898_220 Hb_001898_220 Hb_093084_050--Hb_001898_220 Hb_003057_100 Hb_003057_100 Hb_093084_050--Hb_003057_100 Hb_093084_050--Hb_000041_050 Hb_000445_420 Hb_000445_420 Hb_093084_050--Hb_000445_420 Hb_000041_050--Hb_000700_110 Hb_007441_120 Hb_007441_120 Hb_000041_050--Hb_007441_120 Hb_001833_110 Hb_001833_110 Hb_000041_050--Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_000041_050--Hb_002759_060 Hb_002477_330 Hb_002477_330 Hb_000041_050--Hb_002477_330 Hb_106724_020 Hb_106724_020 Hb_001102_140--Hb_106724_020 Hb_005054_290 Hb_005054_290 Hb_001102_140--Hb_005054_290 Hb_000000_460 Hb_000000_460 Hb_001102_140--Hb_000000_460 Hb_002685_110 Hb_002685_110 Hb_001102_140--Hb_002685_110 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_003092_030 Hb_003092_030 Hb_000700_110--Hb_003092_030 Hb_000347_200 Hb_000347_200 Hb_000700_110--Hb_000347_200 Hb_006198_080 Hb_006198_080 Hb_000700_110--Hb_006198_080 Hb_000700_110--Hb_002477_330 Hb_003125_010--Hb_001369_690 Hb_010504_020 Hb_010504_020 Hb_003125_010--Hb_010504_020 Hb_012799_160 Hb_012799_160 Hb_003125_010--Hb_012799_160 Hb_002473_130 Hb_002473_130 Hb_003125_010--Hb_002473_130 Hb_172426_040 Hb_172426_040 Hb_003125_010--Hb_172426_040 Hb_025240_040 Hb_025240_040 Hb_003125_010--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_001369_690--Hb_004218_110 Hb_000331_450 Hb_000331_450 Hb_001369_690--Hb_000331_450 Hb_015934_070 Hb_015934_070 Hb_001369_690--Hb_015934_070 Hb_012053_070 Hb_012053_070 Hb_001369_690--Hb_012053_070 Hb_001369_690--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.2294 48.7035 31.3153 70.6729 63.8846 108.754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.077 79.3655 116.543 63.4302 47.1749

CAGE analysis