Hb_060715_010

Information

Type -
Description -
Location Contig60715: 27-772
Sequence    

Annotation

kegg
ID tcc:TCM_005844
description WD-40 repeat family protein / notchless protein, putative isoform 1
nr
ID XP_012475422.1
description PREDICTED: notchless protein homolog [Gossypium raimondii]
swissprot
ID Q9FLX9
description Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1
trembl
ID A0A0D2R6C3
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G170600 PE=4 SV=1
Gene Ontology
ID GO:0005634
description notchless protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060715_010 0.0 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
2 Hb_005143_040 0.1271125996 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
3 Hb_000416_070 0.1382834507 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
4 Hb_000003_540 0.1413437553 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
5 Hb_012760_130 0.1495920061 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
6 Hb_184570_010 0.1508696644 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
7 Hb_003994_270 0.1522715698 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
8 Hb_002344_130 0.1586776233 - - PREDICTED: copper transporter 5 [Jatropha curcas]
9 Hb_000167_060 0.158708014 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas]
10 Hb_181385_010 0.161263791 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
11 Hb_007123_060 0.1615594067 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
12 Hb_003878_010 0.1644873359 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
13 Hb_066913_010 0.1654802716 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
14 Hb_001287_080 0.1655906451 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007403_060 0.1697046345 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
16 Hb_078185_010 0.1697120572 - - -
17 Hb_002687_080 0.1714785024 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
18 Hb_001584_080 0.1719701119 - - hypothetical protein JCGZ_23206 [Jatropha curcas]
19 Hb_004784_020 0.172173537 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
20 Hb_000670_050 0.1724640113 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]

Gene co-expression network

sample Hb_060715_010 Hb_060715_010 Hb_005143_040 Hb_005143_040 Hb_060715_010--Hb_005143_040 Hb_000416_070 Hb_000416_070 Hb_060715_010--Hb_000416_070 Hb_000003_540 Hb_000003_540 Hb_060715_010--Hb_000003_540 Hb_012760_130 Hb_012760_130 Hb_060715_010--Hb_012760_130 Hb_184570_010 Hb_184570_010 Hb_060715_010--Hb_184570_010 Hb_003994_270 Hb_003994_270 Hb_060715_010--Hb_003994_270 Hb_000023_280 Hb_000023_280 Hb_005143_040--Hb_000023_280 Hb_001215_040 Hb_001215_040 Hb_005143_040--Hb_001215_040 Hb_005914_080 Hb_005914_080 Hb_005143_040--Hb_005914_080 Hb_002391_270 Hb_002391_270 Hb_005143_040--Hb_002391_270 Hb_005054_290 Hb_005054_290 Hb_005143_040--Hb_005054_290 Hb_076693_030 Hb_076693_030 Hb_005143_040--Hb_076693_030 Hb_000416_070--Hb_184570_010 Hb_000069_160 Hb_000069_160 Hb_000416_070--Hb_000069_160 Hb_140291_010 Hb_140291_010 Hb_000416_070--Hb_140291_010 Hb_000416_070--Hb_012760_130 Hb_004934_070 Hb_004934_070 Hb_000416_070--Hb_004934_070 Hb_002687_080 Hb_002687_080 Hb_000416_070--Hb_002687_080 Hb_005784_040 Hb_005784_040 Hb_000003_540--Hb_005784_040 Hb_002631_280 Hb_002631_280 Hb_000003_540--Hb_002631_280 Hb_000670_050 Hb_000670_050 Hb_000003_540--Hb_000670_050 Hb_000245_080 Hb_000245_080 Hb_000003_540--Hb_000245_080 Hb_002344_130 Hb_002344_130 Hb_000003_540--Hb_002344_130 Hb_181385_010 Hb_181385_010 Hb_000003_540--Hb_181385_010 Hb_004883_050 Hb_004883_050 Hb_012760_130--Hb_004883_050 Hb_007123_060 Hb_007123_060 Hb_012760_130--Hb_007123_060 Hb_005731_120 Hb_005731_120 Hb_012760_130--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_012760_130--Hb_001287_080 Hb_003498_090 Hb_003498_090 Hb_012760_130--Hb_003498_090 Hb_003011_040 Hb_003011_040 Hb_184570_010--Hb_003011_040 Hb_003363_120 Hb_003363_120 Hb_184570_010--Hb_003363_120 Hb_003878_010 Hb_003878_010 Hb_184570_010--Hb_003878_010 Hb_000155_180 Hb_000155_180 Hb_184570_010--Hb_000155_180 Hb_004223_220 Hb_004223_220 Hb_184570_010--Hb_004223_220 Hb_001377_180 Hb_001377_180 Hb_003994_270--Hb_001377_180 Hb_000641_020 Hb_000641_020 Hb_003994_270--Hb_000641_020 Hb_003994_270--Hb_000155_180 Hb_000215_200 Hb_000215_200 Hb_003994_270--Hb_000215_200 Hb_012653_040 Hb_012653_040 Hb_003994_270--Hb_012653_040 Hb_000771_100 Hb_000771_100 Hb_003994_270--Hb_000771_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7023 31.5505 10.6891 75.8699 35.5379 54.8156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.1878 60.239 10.6097 23.6207 5.40683

CAGE analysis