Hb_006788_120

Information

Type -
Description -
Location Contig6788: 72253-75029
Sequence    

Annotation

kegg
ID pmum:103334180
description beta-carotene isomerase D27, chloroplastic
nr
ID XP_012092479.1
description PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
swissprot
ID C7AU21
description Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D27 PE=1 SV=1
trembl
ID A0A067JMY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21856 PE=4 SV=1
Gene Ontology
ID GO:0016853
description beta-carotene isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_120 0.0 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
2 Hb_003038_210 0.1528778336 - - hypothetical protein B456_006G076400 [Gossypium raimondii]
3 Hb_000416_070 0.1687989996 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
4 Hb_020400_030 0.1742927662 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
5 Hb_003498_090 0.1783550659 - - hypothetical protein RCOM_0867850 [Ricinus communis]
6 Hb_007101_300 0.1898685052 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
7 Hb_000009_240 0.1904602803 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
8 Hb_000107_310 0.1912840188 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
9 Hb_031089_040 0.1921398394 - - thioredoxin H-type 1 [Hevea brasiliensis]
10 Hb_032225_010 0.1974050732 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_000111_380 0.1976767007 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
12 Hb_182964_010 0.1981344677 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
13 Hb_006909_030 0.198326809 - - 40S ribosomal protein S17B [Hevea brasiliensis]
14 Hb_005914_080 0.1985320828 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
15 Hb_007735_030 0.1997064637 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
16 Hb_003389_040 0.2004794251 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
17 Hb_005333_070 0.2008799104 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012760_130 0.201250451 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
19 Hb_000264_360 0.2018246614 - - hypothetical protein JCGZ_21443 [Jatropha curcas]
20 Hb_001225_080 0.2023436056 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]

Gene co-expression network

sample Hb_006788_120 Hb_006788_120 Hb_003038_210 Hb_003038_210 Hb_006788_120--Hb_003038_210 Hb_000416_070 Hb_000416_070 Hb_006788_120--Hb_000416_070 Hb_020400_030 Hb_020400_030 Hb_006788_120--Hb_020400_030 Hb_003498_090 Hb_003498_090 Hb_006788_120--Hb_003498_090 Hb_007101_300 Hb_007101_300 Hb_006788_120--Hb_007101_300 Hb_000009_240 Hb_000009_240 Hb_006788_120--Hb_000009_240 Hb_032225_010 Hb_032225_010 Hb_003038_210--Hb_032225_010 Hb_000111_380 Hb_000111_380 Hb_003038_210--Hb_000111_380 Hb_002473_130 Hb_002473_130 Hb_003038_210--Hb_002473_130 Hb_003038_210--Hb_007101_300 Hb_002271_020 Hb_002271_020 Hb_003038_210--Hb_002271_020 Hb_020665_040 Hb_020665_040 Hb_003038_210--Hb_020665_040 Hb_184570_010 Hb_184570_010 Hb_000416_070--Hb_184570_010 Hb_000069_160 Hb_000069_160 Hb_000416_070--Hb_000069_160 Hb_140291_010 Hb_140291_010 Hb_000416_070--Hb_140291_010 Hb_012760_130 Hb_012760_130 Hb_000416_070--Hb_012760_130 Hb_004934_070 Hb_004934_070 Hb_000416_070--Hb_004934_070 Hb_002687_080 Hb_002687_080 Hb_000416_070--Hb_002687_080 Hb_000363_500 Hb_000363_500 Hb_020400_030--Hb_000363_500 Hb_002774_060 Hb_002774_060 Hb_020400_030--Hb_002774_060 Hb_000045_090 Hb_000045_090 Hb_020400_030--Hb_000045_090 Hb_003847_080 Hb_003847_080 Hb_020400_030--Hb_003847_080 Hb_022250_130 Hb_022250_130 Hb_020400_030--Hb_022250_130 Hb_000107_310 Hb_000107_310 Hb_020400_030--Hb_000107_310 Hb_010997_080 Hb_010997_080 Hb_003498_090--Hb_010997_080 Hb_008643_040 Hb_008643_040 Hb_003498_090--Hb_008643_040 Hb_000125_130 Hb_000125_130 Hb_003498_090--Hb_000125_130 Hb_010712_030 Hb_010712_030 Hb_003498_090--Hb_010712_030 Hb_001430_120 Hb_001430_120 Hb_003498_090--Hb_001430_120 Hb_000343_160 Hb_000343_160 Hb_003498_090--Hb_000343_160 Hb_003389_040 Hb_003389_040 Hb_007101_300--Hb_003389_040 Hb_000032_380 Hb_000032_380 Hb_007101_300--Hb_000032_380 Hb_008226_060 Hb_008226_060 Hb_007101_300--Hb_008226_060 Hb_001225_080 Hb_001225_080 Hb_007101_300--Hb_001225_080 Hb_000417_040 Hb_000417_040 Hb_007101_300--Hb_000417_040 Hb_005489_060 Hb_005489_060 Hb_007101_300--Hb_005489_060 Hb_000318_290 Hb_000318_290 Hb_000009_240--Hb_000318_290 Hb_002391_270 Hb_002391_270 Hb_000009_240--Hb_002391_270 Hb_005914_080 Hb_005914_080 Hb_000009_240--Hb_005914_080 Hb_004767_100 Hb_004767_100 Hb_000009_240--Hb_004767_100 Hb_003777_310 Hb_003777_310 Hb_000009_240--Hb_003777_310 Hb_003940_040 Hb_003940_040 Hb_000009_240--Hb_003940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0664041 0.46988 0.185206 0.511733 0.287722 0.850566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.74482 0.585649 0.385139 0.107759 0.106847

CAGE analysis