Hb_000343_160

Information

Type -
Description -
Location Contig343: 133423-137427
Sequence    

Annotation

kegg
ID tcc:TCM_028683
description Structural molecules
nr
ID XP_012073327.1
description PREDICTED: protein SYS1 homolog [Jatropha curcas]
swissprot
ID Q55E69
description Protein SYS1 homolog OS=Dictyostelium discoideum GN=sys1 PE=3 SV=1
trembl
ID A0A067KY88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06256 PE=4 SV=1
Gene Ontology
ID GO:0000139
description protein sys1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35846: 133243-137521 , PASA_asmbl_35847: 135204-135530
cDNA
(Sanger)
(ID:Location)		 020_E23.ab1: 133250-135775

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_160 0.0 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
2 Hb_005333_070 0.0905114885 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000125_130 0.0933981155 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
4 Hb_007590_010 0.0944329204 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_004767_100 0.0957364853 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
6 Hb_000780_060 0.099718004 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
7 Hb_005686_060 0.1000084031 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
8 Hb_004310_020 0.1011160575 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
9 Hb_000953_020 0.1011577881 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
10 Hb_000069_160 0.1012463545 - - -
11 Hb_181235_010 0.1020494916 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
12 Hb_003498_090 0.1021007795 - - hypothetical protein RCOM_0867850 [Ricinus communis]
13 Hb_008643_040 0.1025515952 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
14 Hb_002154_030 0.1039665398 - - RNA binding protein, putative [Ricinus communis]
15 Hb_000109_160 0.1040508862 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
16 Hb_000245_130 0.1048335278 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
17 Hb_000060_040 0.1048686643 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
18 Hb_000125_170 0.1048887126 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
19 Hb_006332_010 0.1049779219 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
20 Hb_010712_030 0.1051958121 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000343_160 Hb_000343_160 Hb_005333_070 Hb_005333_070 Hb_000343_160--Hb_005333_070 Hb_000125_130 Hb_000125_130 Hb_000343_160--Hb_000125_130 Hb_007590_010 Hb_007590_010 Hb_000343_160--Hb_007590_010 Hb_004767_100 Hb_004767_100 Hb_000343_160--Hb_004767_100 Hb_000780_060 Hb_000780_060 Hb_000343_160--Hb_000780_060 Hb_005686_060 Hb_005686_060 Hb_000343_160--Hb_005686_060 Hb_001358_030 Hb_001358_030 Hb_005333_070--Hb_001358_030 Hb_005333_070--Hb_007590_010 Hb_000245_130 Hb_000245_130 Hb_005333_070--Hb_000245_130 Hb_003929_250 Hb_003929_250 Hb_005333_070--Hb_003929_250 Hb_012008_020 Hb_012008_020 Hb_005333_070--Hb_012008_020 Hb_001226_160 Hb_001226_160 Hb_005333_070--Hb_001226_160 Hb_007904_200 Hb_007904_200 Hb_000125_130--Hb_007904_200 Hb_008643_040 Hb_008643_040 Hb_000125_130--Hb_008643_040 Hb_010712_030 Hb_010712_030 Hb_000125_130--Hb_010712_030 Hb_000365_390 Hb_000365_390 Hb_000125_130--Hb_000365_390 Hb_010457_030 Hb_010457_030 Hb_000125_130--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_000125_130--Hb_002835_080 Hb_000099_240 Hb_000099_240 Hb_007590_010--Hb_000099_240 Hb_007590_010--Hb_001358_030 Hb_007590_010--Hb_001226_160 Hb_000923_020 Hb_000923_020 Hb_007590_010--Hb_000923_020 Hb_168000_010 Hb_168000_010 Hb_007590_010--Hb_168000_010 Hb_004032_150 Hb_004032_150 Hb_004767_100--Hb_004032_150 Hb_000608_240 Hb_000608_240 Hb_004767_100--Hb_000608_240 Hb_000318_290 Hb_000318_290 Hb_004767_100--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_004767_100--Hb_005170_040 Hb_148644_010 Hb_148644_010 Hb_004767_100--Hb_148644_010 Hb_000205_300 Hb_000205_300 Hb_004767_100--Hb_000205_300 Hb_000349_060 Hb_000349_060 Hb_000780_060--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000780_060--Hb_002983_010 Hb_000780_060--Hb_001358_030 Hb_001301_160 Hb_001301_160 Hb_000780_060--Hb_001301_160 Hb_003038_030 Hb_003038_030 Hb_000780_060--Hb_003038_030 Hb_000060_040 Hb_000060_040 Hb_000780_060--Hb_000060_040 Hb_004705_100 Hb_004705_100 Hb_005686_060--Hb_004705_100 Hb_000045_090 Hb_000045_090 Hb_005686_060--Hb_000045_090 Hb_010172_080 Hb_010172_080 Hb_005686_060--Hb_010172_080 Hb_009773_020 Hb_009773_020 Hb_005686_060--Hb_009773_020 Hb_000510_130 Hb_000510_130 Hb_005686_060--Hb_000510_130 Hb_002078_150 Hb_002078_150 Hb_005686_060--Hb_002078_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9177 19.6124 6.9425 20.2293 20.1967 33.5049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9231 24.7494 24.518 11.0397 3.31208

CAGE analysis