Hb_005000_250

Information

Type -
Description -
Location Contig5000: 262417-265979
Sequence    

Annotation

kegg
ID vvi:100252645
description ATP-dependent zinc metalloprotease FTSH 4, mitochondrial
nr
ID XP_010648347.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
swissprot
ID Q8LQJ8
description ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1
trembl
ID W1NEV8
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00136p00062620 PE=3 SV=1
Gene Ontology
ID GO:0005739
description atp-dependent zinc metalloprotease ftsh mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_250 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
2 Hb_006907_100 0.1910423631 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
3 Hb_000302_130 0.1960192137 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
4 Hb_007136_010 0.1988913607 desease resistance Gene Name: UBA PREDICTED: ATPase WRNIP1 [Jatropha curcas]
5 Hb_171718_020 0.2050514512 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
6 Hb_170674_010 0.2056914725 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
7 Hb_003305_030 0.2137474406 - - -
8 Hb_149714_010 0.2257869457 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
9 Hb_001638_030 0.2268379399 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
10 Hb_000000_340 0.2284773214 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
11 Hb_001769_110 0.230532165 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
12 Hb_000363_350 0.2312059322 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
13 Hb_075230_010 0.2312092495 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
14 Hb_000627_090 0.2338989453 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000926_230 0.2355001046 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000122_050 0.2357091186 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010789_020 0.2359301829 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
18 Hb_001005_160 0.2429227882 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001235_170 0.2430312267 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
20 Hb_000264_290 0.2447924101 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]

Gene co-expression network

sample Hb_005000_250 Hb_005000_250 Hb_006907_100 Hb_006907_100 Hb_005000_250--Hb_006907_100 Hb_000302_130 Hb_000302_130 Hb_005000_250--Hb_000302_130 Hb_007136_010 Hb_007136_010 Hb_005000_250--Hb_007136_010 Hb_171718_020 Hb_171718_020 Hb_005000_250--Hb_171718_020 Hb_170674_010 Hb_170674_010 Hb_005000_250--Hb_170674_010 Hb_003305_030 Hb_003305_030 Hb_005000_250--Hb_003305_030 Hb_006907_100--Hb_000302_130 Hb_000743_030 Hb_000743_030 Hb_006907_100--Hb_000743_030 Hb_000122_050 Hb_000122_050 Hb_006907_100--Hb_000122_050 Hb_155541_010 Hb_155541_010 Hb_006907_100--Hb_155541_010 Hb_005928_050 Hb_005928_050 Hb_006907_100--Hb_005928_050 Hb_000264_290 Hb_000264_290 Hb_000302_130--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000302_130--Hb_000743_030 Hb_000302_130--Hb_000122_050 Hb_012120_030 Hb_012120_030 Hb_000302_130--Hb_012120_030 Hb_007136_010--Hb_003305_030 Hb_018691_020 Hb_018691_020 Hb_007136_010--Hb_018691_020 Hb_002122_030 Hb_002122_030 Hb_007136_010--Hb_002122_030 Hb_041895_040 Hb_041895_040 Hb_007136_010--Hb_041895_040 Hb_053519_010 Hb_053519_010 Hb_007136_010--Hb_053519_010 Hb_001769_110 Hb_001769_110 Hb_007136_010--Hb_001769_110 Hb_000363_350 Hb_000363_350 Hb_171718_020--Hb_000363_350 Hb_001307_190 Hb_001307_190 Hb_171718_020--Hb_001307_190 Hb_000011_050 Hb_000011_050 Hb_171718_020--Hb_000011_050 Hb_014231_020 Hb_014231_020 Hb_171718_020--Hb_014231_020 Hb_000000_340 Hb_000000_340 Hb_171718_020--Hb_000000_340 Hb_000617_310 Hb_000617_310 Hb_171718_020--Hb_000617_310 Hb_085364_010 Hb_085364_010 Hb_170674_010--Hb_085364_010 Hb_001484_100 Hb_001484_100 Hb_170674_010--Hb_001484_100 Hb_002311_140 Hb_002311_140 Hb_170674_010--Hb_002311_140 Hb_003640_020 Hb_003640_020 Hb_170674_010--Hb_003640_020 Hb_003078_030 Hb_003078_030 Hb_170674_010--Hb_003078_030 Hb_000179_180 Hb_000179_180 Hb_170674_010--Hb_000179_180 Hb_002250_050 Hb_002250_050 Hb_003305_030--Hb_002250_050 Hb_003305_030--Hb_041895_040 Hb_000692_210 Hb_000692_210 Hb_003305_030--Hb_000692_210 Hb_000438_090 Hb_000438_090 Hb_003305_030--Hb_000438_090 Hb_003305_030--Hb_171718_020 Hb_164945_010 Hb_164945_010 Hb_003305_030--Hb_164945_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0402968 0.195749 0.164294 0.150923 0.0251584 0.0739437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.12238 0.0722104 0 0.0576331 0

CAGE analysis