Hb_002659_130

Information

Type -
Description -
Location Contig2659: 130225-130506
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27762: 130058-134276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002659_130 0.0 - - -
2 Hb_000840_060 0.1843171153 - - -
3 Hb_001050_060 0.2453977606 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
4 Hb_114079_010 0.2541964111 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
5 Hb_048103_010 0.2557868531 - - -
6 Hb_060458_010 0.2616468172 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000050_140 0.2629051755 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
8 Hb_010534_050 0.2802880058 - - PREDICTED: 40S ribosomal protein S7 [Jatropha curcas]
9 Hb_035436_010 0.2897512562 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
10 Hb_106596_010 0.2951108637 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001708_010 0.2951633173 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
12 Hb_000082_020 0.3034364179 - - -
13 Hb_006422_030 0.306681435 - - -
14 Hb_148658_010 0.316749362 - - -
15 Hb_106873_020 0.3168677275 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
16 Hb_025905_020 0.3180308795 - - major allergen Pru ar 1-like [Jatropha curcas]
17 Hb_054541_010 0.318254356 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
18 Hb_001935_090 0.3200249266 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
19 Hb_041025_010 0.3223508429 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
20 Hb_138462_010 0.3223614078 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]

Gene co-expression network

sample Hb_002659_130 Hb_002659_130 Hb_000840_060 Hb_000840_060 Hb_002659_130--Hb_000840_060 Hb_001050_060 Hb_001050_060 Hb_002659_130--Hb_001050_060 Hb_114079_010 Hb_114079_010 Hb_002659_130--Hb_114079_010 Hb_048103_010 Hb_048103_010 Hb_002659_130--Hb_048103_010 Hb_060458_010 Hb_060458_010 Hb_002659_130--Hb_060458_010 Hb_000050_140 Hb_000050_140 Hb_002659_130--Hb_000050_140 Hb_153258_020 Hb_153258_020 Hb_000840_060--Hb_153258_020 Hb_001050_020 Hb_001050_020 Hb_000840_060--Hb_001050_020 Hb_000566_180 Hb_000566_180 Hb_000840_060--Hb_000566_180 Hb_000840_060--Hb_060458_010 Hb_000840_060--Hb_001050_060 Hb_010534_050 Hb_010534_050 Hb_001050_060--Hb_010534_050 Hb_000136_190 Hb_000136_190 Hb_001050_060--Hb_000136_190 Hb_001050_030 Hb_001050_030 Hb_001050_060--Hb_001050_030 Hb_041025_010 Hb_041025_010 Hb_001050_060--Hb_041025_010 Hb_004724_470 Hb_004724_470 Hb_001050_060--Hb_004724_470 Hb_000082_020 Hb_000082_020 Hb_001050_060--Hb_000082_020 Hb_114079_010--Hb_000082_020 Hb_183522_010 Hb_183522_010 Hb_114079_010--Hb_183522_010 Hb_114079_010--Hb_041025_010 Hb_003030_040 Hb_003030_040 Hb_114079_010--Hb_003030_040 Hb_025905_020 Hb_025905_020 Hb_114079_010--Hb_025905_020 Hb_010964_020 Hb_010964_020 Hb_114079_010--Hb_010964_020 Hb_023051_010 Hb_023051_010 Hb_048103_010--Hb_023051_010 Hb_000792_080 Hb_000792_080 Hb_048103_010--Hb_000792_080 Hb_009372_050 Hb_009372_050 Hb_048103_010--Hb_009372_050 Hb_000258_360 Hb_000258_360 Hb_048103_010--Hb_000258_360 Hb_004052_160 Hb_004052_160 Hb_048103_010--Hb_004052_160 Hb_141296_010 Hb_141296_010 Hb_060458_010--Hb_141296_010 Hb_002126_020 Hb_002126_020 Hb_060458_010--Hb_002126_020 Hb_006422_030 Hb_006422_030 Hb_060458_010--Hb_006422_030 Hb_060458_010--Hb_000082_020 Hb_005318_020 Hb_005318_020 Hb_060458_010--Hb_005318_020 Hb_060458_010--Hb_114079_010 Hb_001935_090 Hb_001935_090 Hb_000050_140--Hb_001935_090 Hb_001595_040 Hb_001595_040 Hb_000050_140--Hb_001595_040 Hb_000050_140--Hb_001050_060 Hb_000505_070 Hb_000505_070 Hb_000050_140--Hb_000505_070 Hb_003102_030 Hb_003102_030 Hb_000050_140--Hb_003102_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.373853 0.84294 0.658574 2.3383 0 2.8528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.477096 0 0.516049

CAGE analysis