Hb_000258_360

Information

Type -
Description -
Location Contig258: 333663-334241
Sequence    

Annotation

kegg
ID egr:104455487
description uncharacterized LOC104455487
nr
ID XP_010068574.1
description PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID B9RVI3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0962700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_360 0.0 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
2 Hb_011139_060 0.1539409553 - - -
3 Hb_169329_010 0.1587205448 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
4 Hb_177152_010 0.1880124854 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
5 Hb_144550_020 0.2171198627 - - -
6 Hb_060054_010 0.2173897115 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
7 Hb_013358_100 0.2251706073 - - unknown [Medicago truncatula]
8 Hb_065841_010 0.2252856738 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
9 Hb_000997_010 0.230586214 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
10 Hb_076233_020 0.2346721993 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
11 Hb_134488_010 0.2407080249 - - -
12 Hb_000136_190 0.2463439657 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
13 Hb_006269_040 0.2493393581 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
14 Hb_000979_010 0.2517576604 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
15 Hb_057247_010 0.2555499529 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
16 Hb_059641_010 0.2565002143 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
17 Hb_025905_020 0.2565596195 - - major allergen Pru ar 1-like [Jatropha curcas]
18 Hb_048103_010 0.2574535064 - - -
19 Hb_070541_030 0.2595346483 - - -
20 Hb_023051_010 0.2610648824 - - PREDICTED: putative amidase C869.01 [Populus euphratica]

Gene co-expression network

sample Hb_000258_360 Hb_000258_360 Hb_011139_060 Hb_011139_060 Hb_000258_360--Hb_011139_060 Hb_169329_010 Hb_169329_010 Hb_000258_360--Hb_169329_010 Hb_177152_010 Hb_177152_010 Hb_000258_360--Hb_177152_010 Hb_144550_020 Hb_144550_020 Hb_000258_360--Hb_144550_020 Hb_060054_010 Hb_060054_010 Hb_000258_360--Hb_060054_010 Hb_013358_100 Hb_013358_100 Hb_000258_360--Hb_013358_100 Hb_011139_060--Hb_169329_010 Hb_011139_060--Hb_013358_100 Hb_054885_010 Hb_054885_010 Hb_011139_060--Hb_054885_010 Hb_011139_060--Hb_144550_020 Hb_011139_060--Hb_177152_010 Hb_059641_010 Hb_059641_010 Hb_169329_010--Hb_059641_010 Hb_169329_010--Hb_177152_010 Hb_004935_080 Hb_004935_080 Hb_169329_010--Hb_004935_080 Hb_169329_010--Hb_013358_100 Hb_000136_190 Hb_000136_190 Hb_169329_010--Hb_000136_190 Hb_177152_010--Hb_013358_100 Hb_145317_010 Hb_145317_010 Hb_177152_010--Hb_145317_010 Hb_035436_010 Hb_035436_010 Hb_177152_010--Hb_035436_010 Hb_065841_010 Hb_065841_010 Hb_177152_010--Hb_065841_010 Hb_178620_010 Hb_178620_010 Hb_177152_010--Hb_178620_010 Hb_012395_080 Hb_012395_080 Hb_144550_020--Hb_012395_080 Hb_006269_040 Hb_006269_040 Hb_144550_020--Hb_006269_040 Hb_144550_020--Hb_000136_190 Hb_002370_040 Hb_002370_040 Hb_144550_020--Hb_002370_040 Hb_003854_020 Hb_003854_020 Hb_144550_020--Hb_003854_020 Hb_000330_160 Hb_000330_160 Hb_144550_020--Hb_000330_160 Hb_000589_230 Hb_000589_230 Hb_060054_010--Hb_000589_230 Hb_106873_020 Hb_106873_020 Hb_060054_010--Hb_106873_020 Hb_025905_020 Hb_025905_020 Hb_060054_010--Hb_025905_020 Hb_003025_060 Hb_003025_060 Hb_060054_010--Hb_003025_060 Hb_001418_060 Hb_001418_060 Hb_060054_010--Hb_001418_060 Hb_068569_010 Hb_068569_010 Hb_013358_100--Hb_068569_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_013358_100--Hb_035436_010 Hb_013358_100--Hb_004935_080 Hb_013358_100--Hb_065841_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.685034 0.669413 0.383714 1.27066 0.372502 1.30706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0615318 0

CAGE analysis