Hb_060054_010

Information

Type -
Description -
Location Contig60054: 1-400
Sequence    

Annotation

kegg
ID rcu:RCOM_1324640
description NADH-ubiquinone oxidoreductase subunit B17.2, putative (EC:1.6.99.3)
nr
ID XP_002520021.1
description NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
swissprot
ID Q9M9M9
description Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1
trembl
ID B9S202
description NADH-ubiquinone oxidoreductase subunit B17.2, putative OS=Ricinus communis GN=RCOM_1324640 PE=4 SV=1
Gene Ontology
ID GO:0005747
description probable nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060054_010 0.0 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
2 Hb_000589_230 0.1085174521 - - unknown [Picea sitchensis]
3 Hb_106873_020 0.1450784701 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_025905_020 0.2003817475 - - major allergen Pru ar 1-like [Jatropha curcas]
5 Hb_003025_060 0.2013589961 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
6 Hb_000258_360 0.2173897115 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
7 Hb_001418_060 0.2256727009 - - -
8 Hb_134488_010 0.2261037551 - - -
9 Hb_169329_010 0.2513704581 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
10 Hb_106596_010 0.2518325149 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001231_070 0.2522805234 - - -
12 Hb_000033_070 0.2534100837 - - unnamed protein product [Oryza sativa Japonica Group]
13 Hb_130134_020 0.2565740811 - - -
14 Hb_041025_010 0.2583503668 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
15 Hb_011139_060 0.2608430254 - - -
16 Hb_000082_020 0.2615438024 - - -
17 Hb_081815_010 0.2672320907 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
18 Hb_148658_010 0.2702904897 - - -
19 Hb_002078_190 0.2703885746 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000066_180 0.2707387679 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]

Gene co-expression network

sample Hb_060054_010 Hb_060054_010 Hb_000589_230 Hb_000589_230 Hb_060054_010--Hb_000589_230 Hb_106873_020 Hb_106873_020 Hb_060054_010--Hb_106873_020 Hb_025905_020 Hb_025905_020 Hb_060054_010--Hb_025905_020 Hb_003025_060 Hb_003025_060 Hb_060054_010--Hb_003025_060 Hb_000258_360 Hb_000258_360 Hb_060054_010--Hb_000258_360 Hb_001418_060 Hb_001418_060 Hb_060054_010--Hb_001418_060 Hb_000589_230--Hb_106873_020 Hb_000589_230--Hb_003025_060 Hb_081815_010 Hb_081815_010 Hb_000589_230--Hb_081815_010 Hb_000589_230--Hb_001418_060 Hb_115045_010 Hb_115045_010 Hb_000589_230--Hb_115045_010 Hb_106873_020--Hb_003025_060 Hb_148658_010 Hb_148658_010 Hb_106873_020--Hb_148658_010 Hb_106873_020--Hb_081815_010 Hb_005723_070 Hb_005723_070 Hb_106873_020--Hb_005723_070 Hb_010964_020 Hb_010964_020 Hb_025905_020--Hb_010964_020 Hb_178620_010 Hb_178620_010 Hb_025905_020--Hb_178620_010 Hb_134488_010 Hb_134488_010 Hb_025905_020--Hb_134488_010 Hb_114079_010 Hb_114079_010 Hb_025905_020--Hb_114079_010 Hb_035436_010 Hb_035436_010 Hb_025905_020--Hb_035436_010 Hb_041025_010 Hb_041025_010 Hb_025905_020--Hb_041025_010 Hb_000876_010 Hb_000876_010 Hb_003025_060--Hb_000876_010 Hb_003025_060--Hb_005723_070 Hb_002126_020 Hb_002126_020 Hb_003025_060--Hb_002126_020 Hb_011139_060 Hb_011139_060 Hb_000258_360--Hb_011139_060 Hb_169329_010 Hb_169329_010 Hb_000258_360--Hb_169329_010 Hb_177152_010 Hb_177152_010 Hb_000258_360--Hb_177152_010 Hb_144550_020 Hb_144550_020 Hb_000258_360--Hb_144550_020 Hb_013358_100 Hb_013358_100 Hb_000258_360--Hb_013358_100 Hb_001385_090 Hb_001385_090 Hb_001418_060--Hb_001385_090 Hb_130134_020 Hb_130134_020 Hb_001418_060--Hb_130134_020 Hb_074979_030 Hb_074979_030 Hb_001418_060--Hb_074979_030 Hb_005016_070 Hb_005016_070 Hb_001418_060--Hb_005016_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.41234 5.65063 2.95676 26.7794 3.59817 40.4595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.434123 0 0.406442 0

CAGE analysis