Hb_000589_230

Information

Type -
Description -
Location Contig589: 239395-240878
Sequence    

Annotation

kegg
ID bdi:100824376
description peptidyl-prolyl cis-trans isomerase FKBP20-1
nr
ID ABK22214.1
description unknown [Picea sitchensis]
swissprot
ID Q9M2S7
description Peptidyl-prolyl cis-trans isomerase FKBP20-1 OS=Arabidopsis thaliana GN=FKBP20-1 PE=1 SV=1
trembl
ID A0A0A9KBE9
description Peptidyl-prolyl cis-trans isomerase OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0016020
description peptidyl-prolyl cis-trans isomerase fkbp20-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50094: 238195-239766 , PASA_asmbl_50096: 240258-240351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_230 0.0 - - unknown [Picea sitchensis]
2 Hb_060054_010 0.1085174521 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
3 Hb_106873_020 0.1139012541 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_003025_060 0.1832827129 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
5 Hb_081815_010 0.217509205 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
6 Hb_001418_060 0.230637223 - - -
7 Hb_115045_010 0.2463834854 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000876_010 0.2464401866 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
9 Hb_002126_020 0.2476731256 - - ferrochelatase [Medicago truncatula]
10 Hb_134488_010 0.2504959726 - - -
11 Hb_000544_170 0.2541422169 - - conserved hypothetical protein [Ricinus communis]
12 Hb_025905_020 0.2543249631 - - major allergen Pru ar 1-like [Jatropha curcas]
13 Hb_005723_070 0.2556707951 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
14 Hb_002450_130 0.2594389599 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
15 Hb_000340_330 0.2605756133 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
16 Hb_001231_070 0.2636326795 - - -
17 Hb_000066_180 0.2681745362 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
18 Hb_000130_170 0.2691331172 - - -
19 Hb_000291_130 0.270260259 - - -
20 Hb_001385_090 0.2720846364 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000589_230 Hb_000589_230 Hb_060054_010 Hb_060054_010 Hb_000589_230--Hb_060054_010 Hb_106873_020 Hb_106873_020 Hb_000589_230--Hb_106873_020 Hb_003025_060 Hb_003025_060 Hb_000589_230--Hb_003025_060 Hb_081815_010 Hb_081815_010 Hb_000589_230--Hb_081815_010 Hb_001418_060 Hb_001418_060 Hb_000589_230--Hb_001418_060 Hb_115045_010 Hb_115045_010 Hb_000589_230--Hb_115045_010 Hb_060054_010--Hb_106873_020 Hb_025905_020 Hb_025905_020 Hb_060054_010--Hb_025905_020 Hb_060054_010--Hb_003025_060 Hb_000258_360 Hb_000258_360 Hb_060054_010--Hb_000258_360 Hb_060054_010--Hb_001418_060 Hb_106873_020--Hb_003025_060 Hb_148658_010 Hb_148658_010 Hb_106873_020--Hb_148658_010 Hb_106873_020--Hb_081815_010 Hb_005723_070 Hb_005723_070 Hb_106873_020--Hb_005723_070 Hb_000876_010 Hb_000876_010 Hb_003025_060--Hb_000876_010 Hb_003025_060--Hb_005723_070 Hb_002126_020 Hb_002126_020 Hb_003025_060--Hb_002126_020 Hb_163132_010 Hb_163132_010 Hb_081815_010--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_081815_010--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_081815_010--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_081815_010--Hb_068804_060 Hb_081815_010--Hb_005723_070 Hb_000300_140 Hb_000300_140 Hb_081815_010--Hb_000300_140 Hb_001385_090 Hb_001385_090 Hb_001418_060--Hb_001385_090 Hb_130134_020 Hb_130134_020 Hb_001418_060--Hb_130134_020 Hb_074979_030 Hb_074979_030 Hb_001418_060--Hb_074979_030 Hb_005016_070 Hb_005016_070 Hb_001418_060--Hb_005016_070 Hb_005601_050 Hb_005601_050 Hb_115045_010--Hb_005601_050 Hb_115045_010--Hb_005016_070 Hb_001032_030 Hb_001032_030 Hb_115045_010--Hb_001032_030 Hb_115045_010--Hb_081815_010 Hb_115045_010--Hb_001418_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07684 0.662331 0.558615 4.87817 0.725599 9.15213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis