Hb_001032_030

Information

Type -
Description -
Location Contig1032: 43050-44058
Sequence    

Annotation

kegg
ID egr:104431533
description 60S ribosomal protein L23a-like
nr
ID XP_010042451.1
description PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
swissprot
ID O22644
description 60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1
trembl
ID A0A067FK20
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031766mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l23a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001032_030 0.0 - - PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
2 Hb_017895_010 0.2340363769 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
3 Hb_115045_010 0.23440998 - - ATP binding protein, putative [Ricinus communis]
4 Hb_011781_040 0.2348249377 - - -
5 Hb_000907_040 0.2482019132 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_002540_040 0.2657236088 - - BnaC05g39550D [Brassica napus]
7 Hb_094437_010 0.2718951087 - - -
8 Hb_002204_040 0.2771002315 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
9 Hb_001762_070 0.2847817666 - - -
10 Hb_005016_070 0.2872279777 - - -
11 Hb_000792_080 0.2874893863 - - hypothetical protein B456_012G111300, partial [Gossypium raimondii]
12 Hb_063716_060 0.3001210536 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001278_080 0.30657651 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
14 Hb_081815_010 0.307950585 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
15 Hb_001418_060 0.3134714338 - - -
16 Hb_101393_010 0.3165365465 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001385_090 0.3169586575 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
18 Hb_000589_230 0.3182201887 - - unknown [Picea sitchensis]
19 Hb_012150_050 0.3227251494 - - protein binding protein, putative [Ricinus communis]
20 Hb_017387_030 0.3351668848 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]

Gene co-expression network

sample Hb_001032_030 Hb_001032_030 Hb_017895_010 Hb_017895_010 Hb_001032_030--Hb_017895_010 Hb_115045_010 Hb_115045_010 Hb_001032_030--Hb_115045_010 Hb_011781_040 Hb_011781_040 Hb_001032_030--Hb_011781_040 Hb_000907_040 Hb_000907_040 Hb_001032_030--Hb_000907_040 Hb_002540_040 Hb_002540_040 Hb_001032_030--Hb_002540_040 Hb_094437_010 Hb_094437_010 Hb_001032_030--Hb_094437_010 Hb_017895_010--Hb_000907_040 Hb_001278_080 Hb_001278_080 Hb_017895_010--Hb_001278_080 Hb_101393_010 Hb_101393_010 Hb_017895_010--Hb_101393_010 Hb_000053_050 Hb_000053_050 Hb_017895_010--Hb_000053_050 Hb_002204_040 Hb_002204_040 Hb_017895_010--Hb_002204_040 Hb_005601_050 Hb_005601_050 Hb_115045_010--Hb_005601_050 Hb_005016_070 Hb_005016_070 Hb_115045_010--Hb_005016_070 Hb_000589_230 Hb_000589_230 Hb_115045_010--Hb_000589_230 Hb_081815_010 Hb_081815_010 Hb_115045_010--Hb_081815_010 Hb_001418_060 Hb_001418_060 Hb_115045_010--Hb_001418_060 Hb_000792_080 Hb_000792_080 Hb_011781_040--Hb_000792_080 Hb_023051_010 Hb_023051_010 Hb_011781_040--Hb_023051_010 Hb_063716_060 Hb_063716_060 Hb_011781_040--Hb_063716_060 Hb_011781_040--Hb_094437_010 Hb_011781_040--Hb_115045_010 Hb_000907_040--Hb_101393_010 Hb_000907_040--Hb_001278_080 Hb_002023_040 Hb_002023_040 Hb_000907_040--Hb_002023_040 Hb_012150_050 Hb_012150_050 Hb_000907_040--Hb_012150_050 Hb_000252_230 Hb_000252_230 Hb_002540_040--Hb_000252_230 Hb_000809_150 Hb_000809_150 Hb_002540_040--Hb_000809_150 Hb_001105_060 Hb_001105_060 Hb_002540_040--Hb_001105_060 Hb_043999_010 Hb_043999_010 Hb_002540_040--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_002540_040--Hb_007765_090 Hb_131621_010 Hb_131621_010 Hb_002540_040--Hb_131621_010 Hb_172572_010 Hb_172572_010 Hb_094437_010--Hb_172572_010 Hb_094437_010--Hb_001278_080 Hb_010534_050 Hb_010534_050 Hb_094437_010--Hb_010534_050 Hb_154381_010 Hb_154381_010 Hb_094437_010--Hb_154381_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111304 0 0.205416 0.159689 0 0.815619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis