Hb_000982_150

Information

Type transcription factor
Description TF Family: Orphans
Location Contig982: 204327-204951
Sequence    

Annotation

kegg
ID rcu:RCOM_1722850
description histidine kinase 1 plant, putative
nr
ID XP_002521153.1
description histidine kinase 1 plant, putative [Ricinus communis]
swissprot
ID P0CL17
description Transcriptional regulatory protein tctD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=tctD PE=2 SV=1
trembl
ID B9S584
description Histidine kinase 1 plant, putative OS=Ricinus communis GN=RCOM_1722850 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_150 0.0 transcription factor TF Family: Orphans histidine kinase 1 plant, putative [Ricinus communis]
2 Hb_020549_010 0.2224680353 - - PREDICTED: uncharacterized protein LOC105638664 isoform X2 [Jatropha curcas]
3 Hb_023051_010 0.2381217844 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
4 Hb_000377_140 0.2568531113 - - -
5 Hb_004052_160 0.2575835439 - - Chain A, Rna Binding Protein
6 Hb_013877_020 0.2796469119 - - Cytochrome P450 [Theobroma cacao]
7 Hb_068347_010 0.2827362827 - - -
8 Hb_036693_010 0.2848446861 - - -
9 Hb_001673_030 0.293025005 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
10 Hb_005730_130 0.2942709775 - - PRA1 family protein [Theobroma cacao]
11 Hb_078568_010 0.2984162172 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
12 Hb_002863_100 0.2996632044 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
13 Hb_002196_010 0.3009238359 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
14 Hb_001622_010 0.3032256639 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_004968_010 0.305043184 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
16 Hb_144547_010 0.3076282398 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_123560_030 0.3103093975 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_001584_180 0.3141765279 - - Photosystem II reaction center PsbP family protein isoform 1 [Theobroma cacao]
19 Hb_061466_020 0.3151777259 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_005273_020 0.3158950626 - - -

Gene co-expression network

sample Hb_000982_150 Hb_000982_150 Hb_020549_010 Hb_020549_010 Hb_000982_150--Hb_020549_010 Hb_023051_010 Hb_023051_010 Hb_000982_150--Hb_023051_010 Hb_000377_140 Hb_000377_140 Hb_000982_150--Hb_000377_140 Hb_004052_160 Hb_004052_160 Hb_000982_150--Hb_004052_160 Hb_013877_020 Hb_013877_020 Hb_000982_150--Hb_013877_020 Hb_068347_010 Hb_068347_010 Hb_000982_150--Hb_068347_010 Hb_001673_030 Hb_001673_030 Hb_020549_010--Hb_001673_030 Hb_001277_410 Hb_001277_410 Hb_020549_010--Hb_001277_410 Hb_087221_010 Hb_087221_010 Hb_020549_010--Hb_087221_010 Hb_020549_010--Hb_013877_020 Hb_001589_070 Hb_001589_070 Hb_020549_010--Hb_001589_070 Hb_000792_080 Hb_000792_080 Hb_023051_010--Hb_000792_080 Hb_023051_010--Hb_000377_140 Hb_048103_010 Hb_048103_010 Hb_023051_010--Hb_048103_010 Hb_023051_010--Hb_004052_160 Hb_011781_040 Hb_011781_040 Hb_023051_010--Hb_011781_040 Hb_009102_020 Hb_009102_020 Hb_000377_140--Hb_009102_020 Hb_144547_010 Hb_144547_010 Hb_000377_140--Hb_144547_010 Hb_123560_030 Hb_123560_030 Hb_000377_140--Hb_123560_030 Hb_000377_140--Hb_004052_160 Hb_182249_010 Hb_182249_010 Hb_004052_160--Hb_182249_010 Hb_009393_200 Hb_009393_200 Hb_004052_160--Hb_009393_200 Hb_013358_100 Hb_013358_100 Hb_004052_160--Hb_013358_100 Hb_002196_010 Hb_002196_010 Hb_004052_160--Hb_002196_010 Hb_040747_010 Hb_040747_010 Hb_004052_160--Hb_040747_010 Hb_000122_010 Hb_000122_010 Hb_004052_160--Hb_000122_010 Hb_176844_010 Hb_176844_010 Hb_013877_020--Hb_176844_010 Hb_000283_120 Hb_000283_120 Hb_013877_020--Hb_000283_120 Hb_013877_020--Hb_001277_410 Hb_004619_070 Hb_004619_070 Hb_013877_020--Hb_004619_070 Hb_000270_870 Hb_000270_870 Hb_013877_020--Hb_000270_870 Hb_002843_090 Hb_002843_090 Hb_068347_010--Hb_002843_090 Hb_007805_020 Hb_007805_020 Hb_068347_010--Hb_007805_020 Hb_000347_090 Hb_000347_090 Hb_068347_010--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_068347_010--Hb_011903_010 Hb_068347_010--Hb_020549_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87769 1.00494 1.60764 1.07495 0.161263 1.09448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.105095 0.178115 0.0436813 0

CAGE analysis