Hb_068347_010

Information

Type -
Description -
Location Contig68347: 326-1405
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068347_010 0.0 - - -
2 Hb_002843_090 0.1993583152 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
3 Hb_007805_020 0.2008362416 - - -
4 Hb_000347_090 0.2407589744 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
5 Hb_011903_010 0.2444077928 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_020549_010 0.268569858 - - PREDICTED: uncharacterized protein LOC105638664 isoform X2 [Jatropha curcas]
7 Hb_000982_150 0.2827362827 transcription factor TF Family: Orphans histidine kinase 1 plant, putative [Ricinus communis]
8 Hb_087221_010 0.2898197997 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
9 Hb_007926_010 0.2962100618 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
10 Hb_121304_020 0.2978654266 - - -
11 Hb_010531_050 0.2988996827 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
12 Hb_000816_010 0.3076425501 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
13 Hb_013877_020 0.3096635152 - - Cytochrome P450 [Theobroma cacao]
14 Hb_004968_010 0.3104216622 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
15 Hb_000984_250 0.3187984773 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
16 Hb_012384_050 0.3195617924 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
17 Hb_014919_020 0.3239324488 - - -
18 Hb_012404_030 0.3252592712 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
19 Hb_176844_010 0.3270647268 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
20 Hb_099990_030 0.3276808529 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_068347_010 Hb_068347_010 Hb_002843_090 Hb_002843_090 Hb_068347_010--Hb_002843_090 Hb_007805_020 Hb_007805_020 Hb_068347_010--Hb_007805_020 Hb_000347_090 Hb_000347_090 Hb_068347_010--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_068347_010--Hb_011903_010 Hb_020549_010 Hb_020549_010 Hb_068347_010--Hb_020549_010 Hb_000982_150 Hb_000982_150 Hb_068347_010--Hb_000982_150 Hb_167508_010 Hb_167508_010 Hb_002843_090--Hb_167508_010 Hb_000842_060 Hb_000842_060 Hb_002843_090--Hb_000842_060 Hb_002232_300 Hb_002232_300 Hb_002843_090--Hb_002232_300 Hb_002843_090--Hb_011903_010 Hb_000984_250 Hb_000984_250 Hb_002843_090--Hb_000984_250 Hb_010979_010 Hb_010979_010 Hb_007805_020--Hb_010979_010 Hb_007926_010 Hb_007926_010 Hb_007805_020--Hb_007926_010 Hb_004330_030 Hb_004330_030 Hb_007805_020--Hb_004330_030 Hb_171108_010 Hb_171108_010 Hb_007805_020--Hb_171108_010 Hb_010770_010 Hb_010770_010 Hb_007805_020--Hb_010770_010 Hb_000347_090--Hb_011903_010 Hb_000663_030 Hb_000663_030 Hb_000347_090--Hb_000663_030 Hb_188411_010 Hb_188411_010 Hb_000347_090--Hb_188411_010 Hb_161023_010 Hb_161023_010 Hb_000347_090--Hb_161023_010 Hb_121304_020 Hb_121304_020 Hb_000347_090--Hb_121304_020 Hb_011903_010--Hb_188411_010 Hb_011903_010--Hb_000663_030 Hb_006502_100 Hb_006502_100 Hb_011903_010--Hb_006502_100 Hb_011903_010--Hb_161023_010 Hb_020549_010--Hb_000982_150 Hb_001673_030 Hb_001673_030 Hb_020549_010--Hb_001673_030 Hb_001277_410 Hb_001277_410 Hb_020549_010--Hb_001277_410 Hb_087221_010 Hb_087221_010 Hb_020549_010--Hb_087221_010 Hb_013877_020 Hb_013877_020 Hb_020549_010--Hb_013877_020 Hb_001589_070 Hb_001589_070 Hb_020549_010--Hb_001589_070 Hb_023051_010 Hb_023051_010 Hb_000982_150--Hb_023051_010 Hb_000377_140 Hb_000377_140 Hb_000982_150--Hb_000377_140 Hb_004052_160 Hb_004052_160 Hb_000982_150--Hb_004052_160 Hb_000982_150--Hb_013877_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3986 0.183223 0.34839 0.237585 0.298571 0.0946071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0844648 0

CAGE analysis