Hb_006502_100

Information

Type -
Description -
Location Contig6502: 77162-79567
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01580g
description POPTRDRAFT_553456; hypothetical protein
nr
ID XP_002303172.1
description hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
swissprot
ID Q9SMY6
description Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1
trembl
ID B9GZR0
description Pectinesterase OS=Populus trichocarpa GN=POPTR_0003s01580g PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_100 0.0 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
2 Hb_011903_010 0.2594730298 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_004007_060 0.2674545205 - - Ribose-5-phosphate isomerase A [Gossypium arboreum]
4 Hb_000347_090 0.2681739114 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
5 Hb_000260_540 0.2785440153 - - hypothetical protein JCGZ_00592 [Jatropha curcas]
6 Hb_188411_010 0.3193606957 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
7 Hb_002627_070 0.3338914989 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000964_100 0.3378543651 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
9 Hb_000155_060 0.339126523 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002570_010 0.3457616271 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
11 Hb_019592_010 0.347009129 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
12 Hb_000302_070 0.3503792666 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
13 Hb_068347_010 0.3625351693 - - -
14 Hb_004055_110 0.3636482382 - - PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
15 Hb_000794_040 0.3761688501 - - PREDICTED: RING-H2 finger protein ATL29-like [Jatropha curcas]
16 Hb_071379_010 0.3827220881 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
17 Hb_002843_090 0.3835973711 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
18 Hb_161023_010 0.3852806418 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
19 Hb_001001_050 0.3864868857 - - CXE protein [Hevea brasiliensis]
20 Hb_121304_020 0.3876408421 - - -

Gene co-expression network

sample Hb_006502_100 Hb_006502_100 Hb_011903_010 Hb_011903_010 Hb_006502_100--Hb_011903_010 Hb_004007_060 Hb_004007_060 Hb_006502_100--Hb_004007_060 Hb_000347_090 Hb_000347_090 Hb_006502_100--Hb_000347_090 Hb_000260_540 Hb_000260_540 Hb_006502_100--Hb_000260_540 Hb_188411_010 Hb_188411_010 Hb_006502_100--Hb_188411_010 Hb_002627_070 Hb_002627_070 Hb_006502_100--Hb_002627_070 Hb_011903_010--Hb_000347_090 Hb_011903_010--Hb_188411_010 Hb_068347_010 Hb_068347_010 Hb_011903_010--Hb_068347_010 Hb_000663_030 Hb_000663_030 Hb_011903_010--Hb_000663_030 Hb_161023_010 Hb_161023_010 Hb_011903_010--Hb_161023_010 Hb_008891_010 Hb_008891_010 Hb_004007_060--Hb_008891_010 Hb_004007_060--Hb_000260_540 Hb_000816_010 Hb_000816_010 Hb_004007_060--Hb_000816_010 Hb_152587_010 Hb_152587_010 Hb_004007_060--Hb_152587_010 Hb_000879_050 Hb_000879_050 Hb_004007_060--Hb_000879_050 Hb_000347_090--Hb_000663_030 Hb_000347_090--Hb_188411_010 Hb_000347_090--Hb_068347_010 Hb_000347_090--Hb_161023_010 Hb_121304_020 Hb_121304_020 Hb_000347_090--Hb_121304_020 Hb_000260_540--Hb_152587_010 Hb_007008_020 Hb_007008_020 Hb_000260_540--Hb_007008_020 Hb_000100_050 Hb_000100_050 Hb_000260_540--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000260_540--Hb_011978_010 Hb_188411_010--Hb_161023_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_160233_020 Hb_160233_020 Hb_188411_010--Hb_160233_020 Hb_133605_010 Hb_133605_010 Hb_188411_010--Hb_133605_010 Hb_014919_020 Hb_014919_020 Hb_188411_010--Hb_014919_020 Hb_114638_010 Hb_114638_010 Hb_002627_070--Hb_114638_010 Hb_002627_070--Hb_188411_010 Hb_000302_070 Hb_000302_070 Hb_002627_070--Hb_000302_070 Hb_002627_070--Hb_133605_010 Hb_005048_110 Hb_005048_110 Hb_002627_070--Hb_005048_110 Hb_002397_060 Hb_002397_060 Hb_002627_070--Hb_002397_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0523246 0 0.00973014 0.0382409 0.0244999 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis