Hb_000260_540

Information

Type -
Description -
Location Contig260: 369948-372059
Sequence    

Annotation

kegg
ID mdm:103410339
description uncharacterized LOC103410339
nr
ID KDP21805.1
description hypothetical protein JCGZ_00592 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JP77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00592 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_540 0.0 - - hypothetical protein JCGZ_00592 [Jatropha curcas]
2 Hb_152587_010 0.2360518433 - - -
3 Hb_006502_100 0.2785440153 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
4 Hb_004007_060 0.2791994389 - - Ribose-5-phosphate isomerase A [Gossypium arboreum]
5 Hb_007008_020 0.2969032186 - - -
6 Hb_000100_050 0.2972565369 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_011978_010 0.2972960986 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
8 Hb_000375_380 0.2973159356 - - -
9 Hb_004324_380 0.2975280072 - - -
10 Hb_046727_010 0.2980372867 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_080765_020 0.2983286744 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_027393_020 0.2985371885 - - -
13 Hb_000098_280 0.3000000171 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
14 Hb_000953_150 0.3009887282 - - -
15 Hb_002163_060 0.3157158991 - - -
16 Hb_007963_050 0.3173808668 - - -
17 Hb_009693_040 0.3196930946 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
18 Hb_002805_320 0.3199043964 - - -
19 Hb_140049_070 0.3213436178 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000038_160 0.3217258953 - - putative gag protein [Coffea canephora]

Gene co-expression network

sample Hb_000260_540 Hb_000260_540 Hb_152587_010 Hb_152587_010 Hb_000260_540--Hb_152587_010 Hb_006502_100 Hb_006502_100 Hb_000260_540--Hb_006502_100 Hb_004007_060 Hb_004007_060 Hb_000260_540--Hb_004007_060 Hb_007008_020 Hb_007008_020 Hb_000260_540--Hb_007008_020 Hb_000100_050 Hb_000100_050 Hb_000260_540--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000260_540--Hb_011978_010 Hb_001125_030 Hb_001125_030 Hb_152587_010--Hb_001125_030 Hb_059126_010 Hb_059126_010 Hb_152587_010--Hb_059126_010 Hb_000008_050 Hb_000008_050 Hb_152587_010--Hb_000008_050 Hb_005867_010 Hb_005867_010 Hb_152587_010--Hb_005867_010 Hb_001364_020 Hb_001364_020 Hb_152587_010--Hb_001364_020 Hb_011903_010 Hb_011903_010 Hb_006502_100--Hb_011903_010 Hb_006502_100--Hb_004007_060 Hb_000347_090 Hb_000347_090 Hb_006502_100--Hb_000347_090 Hb_188411_010 Hb_188411_010 Hb_006502_100--Hb_188411_010 Hb_002627_070 Hb_002627_070 Hb_006502_100--Hb_002627_070 Hb_008891_010 Hb_008891_010 Hb_004007_060--Hb_008891_010 Hb_000816_010 Hb_000816_010 Hb_004007_060--Hb_000816_010 Hb_004007_060--Hb_152587_010 Hb_000879_050 Hb_000879_050 Hb_004007_060--Hb_000879_050 Hb_046727_010 Hb_046727_010 Hb_007008_020--Hb_046727_010 Hb_080765_020 Hb_080765_020 Hb_007008_020--Hb_080765_020 Hb_007008_020--Hb_000100_050 Hb_007008_020--Hb_011978_010 Hb_000375_380 Hb_000375_380 Hb_007008_020--Hb_000375_380 Hb_004324_380 Hb_004324_380 Hb_007008_020--Hb_004324_380 Hb_000100_050--Hb_011978_010 Hb_000100_050--Hb_000375_380 Hb_000100_050--Hb_004324_380 Hb_027393_020 Hb_027393_020 Hb_000100_050--Hb_027393_020 Hb_000100_050--Hb_046727_010 Hb_011978_010--Hb_000375_380 Hb_011978_010--Hb_004324_380 Hb_011978_010--Hb_027393_020 Hb_011978_010--Hb_046727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0410069 0 0 0.0151429 0.0353949 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis