Hb_027393_020

Information

Type -
Description -
Location Contig27393: 26205-27925
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027393_020 0.0 - - -
2 Hb_004324_380 0.0119479872 - - -
3 Hb_000375_380 0.0154202607 - - -
4 Hb_011978_010 0.0157793599 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
5 Hb_000100_050 0.0165178946 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_007008_020 0.0415740169 - - -
7 Hb_046727_010 0.0619882781 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_080765_020 0.0651717686 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_002163_060 0.0792541855 - - -
10 Hb_000098_280 0.079363213 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
11 Hb_000953_150 0.0860006919 - - -
12 Hb_002805_320 0.0915663126 - - -
13 Hb_140049_070 0.0955609005 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000038_160 0.0966042744 - - putative gag protein [Coffea canephora]
15 Hb_005867_010 0.1346842245 - - -
16 Hb_001364_020 0.1434295156 - - -
17 Hb_007963_050 0.151176253 - - -
18 Hb_009693_040 0.1578160228 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
19 Hb_003607_030 0.1683220688 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
20 Hb_000922_310 0.2203434695 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]

Gene co-expression network

sample Hb_027393_020 Hb_027393_020 Hb_004324_380 Hb_004324_380 Hb_027393_020--Hb_004324_380 Hb_000375_380 Hb_000375_380 Hb_027393_020--Hb_000375_380 Hb_011978_010 Hb_011978_010 Hb_027393_020--Hb_011978_010 Hb_000100_050 Hb_000100_050 Hb_027393_020--Hb_000100_050 Hb_007008_020 Hb_007008_020 Hb_027393_020--Hb_007008_020 Hb_046727_010 Hb_046727_010 Hb_027393_020--Hb_046727_010 Hb_004324_380--Hb_000375_380 Hb_004324_380--Hb_011978_010 Hb_004324_380--Hb_000100_050 Hb_004324_380--Hb_007008_020 Hb_004324_380--Hb_046727_010 Hb_000375_380--Hb_011978_010 Hb_000375_380--Hb_000100_050 Hb_000375_380--Hb_007008_020 Hb_000375_380--Hb_046727_010 Hb_011978_010--Hb_000100_050 Hb_011978_010--Hb_007008_020 Hb_011978_010--Hb_046727_010 Hb_000100_050--Hb_007008_020 Hb_000100_050--Hb_046727_010 Hb_007008_020--Hb_046727_010 Hb_080765_020 Hb_080765_020 Hb_007008_020--Hb_080765_020 Hb_046727_010--Hb_080765_020 Hb_000098_280 Hb_000098_280 Hb_046727_010--Hb_000098_280 Hb_000953_150 Hb_000953_150 Hb_046727_010--Hb_000953_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0778949 0 0 0 0.0787926 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis