Hb_004007_060

Information

Type -
Description -
Location Contig4007: 57302-59173
Sequence    

Annotation

kegg
ID sita:101781344
description uncharacterized LOC101781344
nr
ID KHG18598.1
description Ribose-5-phosphate isomerase A [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0NVQ3
description Ribose-5-phosphate isomerase A OS=Gossypium arboreum GN=F383_25462 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ribose-5-phosphate isomerase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39835: 58974-59146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_060 0.0 - - Ribose-5-phosphate isomerase A [Gossypium arboreum]
2 Hb_006502_100 0.2674545205 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
3 Hb_008891_010 0.2746466544 - - hypothetical protein EUGRSUZ_D01145 [Eucalyptus grandis]
4 Hb_000260_540 0.2791994389 - - hypothetical protein JCGZ_00592 [Jatropha curcas]
5 Hb_000816_010 0.2869830255 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
6 Hb_152587_010 0.3017530508 - - -
7 Hb_000879_050 0.3060332946 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
8 Hb_007547_050 0.307413235 - - Auxin response factor 9 [Aegilops tauschii]
9 Hb_007192_060 0.3139360599 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002124_020 0.3162760631 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
11 Hb_001097_060 0.3243999395 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
12 Hb_050686_010 0.3248285707 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000789_130 0.3291308718 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
14 Hb_003740_010 0.3319884303 - - conserved hypothetical protein [Ricinus communis]
15 Hb_105427_010 0.3435254729 - - -
16 Hb_068347_010 0.3488638604 - - -
17 Hb_059924_010 0.3488997341 - - -
18 Hb_004055_110 0.349223364 - - PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
19 Hb_103452_020 0.3527985075 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_054436_010 0.3571182619 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]

Gene co-expression network

sample Hb_004007_060 Hb_004007_060 Hb_006502_100 Hb_006502_100 Hb_004007_060--Hb_006502_100 Hb_008891_010 Hb_008891_010 Hb_004007_060--Hb_008891_010 Hb_000260_540 Hb_000260_540 Hb_004007_060--Hb_000260_540 Hb_000816_010 Hb_000816_010 Hb_004007_060--Hb_000816_010 Hb_152587_010 Hb_152587_010 Hb_004007_060--Hb_152587_010 Hb_000879_050 Hb_000879_050 Hb_004007_060--Hb_000879_050 Hb_011903_010 Hb_011903_010 Hb_006502_100--Hb_011903_010 Hb_000347_090 Hb_000347_090 Hb_006502_100--Hb_000347_090 Hb_006502_100--Hb_000260_540 Hb_188411_010 Hb_188411_010 Hb_006502_100--Hb_188411_010 Hb_002627_070 Hb_002627_070 Hb_006502_100--Hb_002627_070 Hb_103452_020 Hb_103452_020 Hb_008891_010--Hb_103452_020 Hb_008891_010--Hb_000260_540 Hb_001251_030 Hb_001251_030 Hb_008891_010--Hb_001251_030 Hb_005800_040 Hb_005800_040 Hb_008891_010--Hb_005800_040 Hb_052761_010 Hb_052761_010 Hb_008891_010--Hb_052761_010 Hb_000260_540--Hb_152587_010 Hb_007008_020 Hb_007008_020 Hb_000260_540--Hb_007008_020 Hb_000100_050 Hb_000100_050 Hb_000260_540--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000260_540--Hb_011978_010 Hb_000789_130 Hb_000789_130 Hb_000816_010--Hb_000789_130 Hb_014919_020 Hb_014919_020 Hb_000816_010--Hb_014919_020 Hb_000984_250 Hb_000984_250 Hb_000816_010--Hb_000984_250 Hb_003740_010 Hb_003740_010 Hb_000816_010--Hb_003740_010 Hb_059301_010 Hb_059301_010 Hb_000816_010--Hb_059301_010 Hb_045481_010 Hb_045481_010 Hb_000816_010--Hb_045481_010 Hb_001125_030 Hb_001125_030 Hb_152587_010--Hb_001125_030 Hb_059126_010 Hb_059126_010 Hb_152587_010--Hb_059126_010 Hb_000008_050 Hb_000008_050 Hb_152587_010--Hb_000008_050 Hb_005867_010 Hb_005867_010 Hb_152587_010--Hb_005867_010 Hb_001364_020 Hb_001364_020 Hb_152587_010--Hb_001364_020 Hb_000605_010 Hb_000605_010 Hb_000879_050--Hb_000605_010 Hb_004007_150 Hb_004007_150 Hb_000879_050--Hb_004007_150 Hb_001677_050 Hb_001677_050 Hb_000879_050--Hb_001677_050 Hb_002124_020 Hb_002124_020 Hb_000879_050--Hb_002124_020 Hb_001632_010 Hb_001632_010 Hb_000879_050--Hb_001632_010 Hb_003534_040 Hb_003534_040 Hb_000879_050--Hb_003534_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.278705 0 0.0479298 0.160598 0.291506 0.0265512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0440043 0

CAGE analysis