Hb_103452_020

Information

Type -
Description -
Location Contig103452: 6372-9560
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0016301
description g-type lectin s-receptor-like serine threonine-protein kinase rks1 isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01353: 6728-6871 , PASA_asmbl_01354: 8421-8731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103452_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_008891_010 0.2982424595 - - hypothetical protein EUGRSUZ_D01145 [Eucalyptus grandis]
3 Hb_185326_010 0.2986561365 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013394_010 0.3135120175 - - PREDICTED: laccase-14-like [Malus domestica]
5 Hb_108854_010 0.3135537741 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_000789_130 0.3140820194 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
7 Hb_011344_080 0.3141611852 - - -
8 Hb_006156_020 0.3177940807 - - -
9 Hb_001251_030 0.3211277877 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
10 Hb_059924_010 0.3214945861 - - -
11 Hb_005800_040 0.3218452059 - - -
12 Hb_052761_010 0.3356248232 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
13 Hb_000739_090 0.3456732295 - - -
14 Hb_004007_060 0.3527985075 - - Ribose-5-phosphate isomerase A [Gossypium arboreum]
15 Hb_004770_040 0.3556339137 - - PREDICTED: serine carboxypeptidase-like 31 [Eucalyptus grandis]
16 Hb_010521_020 0.35882528 - - -
17 Hb_001952_130 0.3608549476 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
18 Hb_008983_060 0.360982355 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
19 Hb_045370_010 0.3615214593 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001944_030 0.3623048334 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]

Gene co-expression network

sample Hb_103452_020 Hb_103452_020 Hb_008891_010 Hb_008891_010 Hb_103452_020--Hb_008891_010 Hb_185326_010 Hb_185326_010 Hb_103452_020--Hb_185326_010 Hb_013394_010 Hb_013394_010 Hb_103452_020--Hb_013394_010 Hb_108854_010 Hb_108854_010 Hb_103452_020--Hb_108854_010 Hb_000789_130 Hb_000789_130 Hb_103452_020--Hb_000789_130 Hb_011344_080 Hb_011344_080 Hb_103452_020--Hb_011344_080 Hb_004007_060 Hb_004007_060 Hb_008891_010--Hb_004007_060 Hb_000260_540 Hb_000260_540 Hb_008891_010--Hb_000260_540 Hb_001251_030 Hb_001251_030 Hb_008891_010--Hb_001251_030 Hb_005800_040 Hb_005800_040 Hb_008891_010--Hb_005800_040 Hb_052761_010 Hb_052761_010 Hb_008891_010--Hb_052761_010 Hb_185326_010--Hb_001251_030 Hb_185326_010--Hb_005800_040 Hb_004128_120 Hb_004128_120 Hb_185326_010--Hb_004128_120 Hb_171108_010 Hb_171108_010 Hb_185326_010--Hb_171108_010 Hb_185326_010--Hb_013394_010 Hb_013394_010--Hb_011344_080 Hb_013394_010--Hb_005800_040 Hb_013394_010--Hb_001251_030 Hb_013394_010--Hb_108854_010 Hb_008071_030 Hb_008071_030 Hb_013394_010--Hb_008071_030 Hb_000594_170 Hb_000594_170 Hb_013394_010--Hb_000594_170 Hb_108854_010--Hb_011344_080 Hb_108854_010--Hb_000594_170 Hb_108854_010--Hb_005800_040 Hb_108854_010--Hb_001251_030 Hb_108854_010--Hb_052761_010 Hb_000816_010 Hb_000816_010 Hb_000789_130--Hb_000816_010 Hb_000984_250 Hb_000984_250 Hb_000789_130--Hb_000984_250 Hb_010521_020 Hb_010521_020 Hb_000789_130--Hb_010521_020 Hb_005568_100 Hb_005568_100 Hb_000789_130--Hb_005568_100 Hb_000505_110 Hb_000505_110 Hb_000789_130--Hb_000505_110 Hb_000453_140 Hb_000453_140 Hb_000789_130--Hb_000453_140 Hb_011344_080--Hb_005800_040 Hb_011344_080--Hb_001251_030 Hb_011344_080--Hb_000594_170 Hb_011344_080--Hb_008071_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285609 0.027261 0.0626501 0.0619857 0.538408 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0163856 0 0.267098 0.0346998

CAGE analysis