Hb_000594_170

Information

Type -
Description -
Location Contig594: 240328-241002
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_170 0.0 - - -
2 Hb_011344_080 0.203688157 - - -
3 Hb_013394_010 0.2153531904 - - PREDICTED: laccase-14-like [Malus domestica]
4 Hb_108854_010 0.245088963 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
5 Hb_008071_030 0.2632083506 - - -
6 Hb_000908_010 0.3128539066 - - Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_005800_040 0.3132790704 - - -
8 Hb_001251_030 0.3283521695 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
9 Hb_022790_030 0.333291836 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
10 Hb_007809_070 0.3338291335 - - conserved hypothetical protein [Ricinus communis]
11 Hb_047735_010 0.3454438824 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
12 Hb_000002_450 0.3454686148 - - hypothetical protein JCGZ_02285 [Jatropha curcas]
13 Hb_155103_010 0.362303724 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_006156_020 0.3626972265 - - -
15 Hb_003589_010 0.3635409966 - - -
16 Hb_008948_030 0.3643527932 - - hypothetical protein RCOM_0224470 [Ricinus communis]
17 Hb_003878_160 0.3658866524 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012654_030 0.3701622379 - - conserved hypothetical protein [Ricinus communis]
19 Hb_181132_010 0.3716531647 - - -
20 Hb_000757_080 0.3731003804 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_000594_170 Hb_000594_170 Hb_011344_080 Hb_011344_080 Hb_000594_170--Hb_011344_080 Hb_013394_010 Hb_013394_010 Hb_000594_170--Hb_013394_010 Hb_108854_010 Hb_108854_010 Hb_000594_170--Hb_108854_010 Hb_008071_030 Hb_008071_030 Hb_000594_170--Hb_008071_030 Hb_000908_010 Hb_000908_010 Hb_000594_170--Hb_000908_010 Hb_005800_040 Hb_005800_040 Hb_000594_170--Hb_005800_040 Hb_011344_080--Hb_013394_010 Hb_011344_080--Hb_005800_040 Hb_001251_030 Hb_001251_030 Hb_011344_080--Hb_001251_030 Hb_011344_080--Hb_108854_010 Hb_011344_080--Hb_008071_030 Hb_013394_010--Hb_005800_040 Hb_013394_010--Hb_001251_030 Hb_013394_010--Hb_108854_010 Hb_013394_010--Hb_008071_030 Hb_108854_010--Hb_005800_040 Hb_108854_010--Hb_001251_030 Hb_052761_010 Hb_052761_010 Hb_108854_010--Hb_052761_010 Hb_004466_010 Hb_004466_010 Hb_008071_030--Hb_004466_010 Hb_008071_030--Hb_005800_040 Hb_008071_030--Hb_001251_030 Hb_001948_010 Hb_001948_010 Hb_008071_030--Hb_001948_010 Hb_001545_230 Hb_001545_230 Hb_000908_010--Hb_001545_230 Hb_008983_060 Hb_008983_060 Hb_000908_010--Hb_008983_060 Hb_000107_320 Hb_000107_320 Hb_000908_010--Hb_000107_320 Hb_030827_050 Hb_030827_050 Hb_000908_010--Hb_030827_050 Hb_003947_010 Hb_003947_010 Hb_000908_010--Hb_003947_010 Hb_001999_190 Hb_001999_190 Hb_000908_010--Hb_001999_190 Hb_005800_040--Hb_001251_030 Hb_005800_040--Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_005800_040--Hb_000739_090 Hb_006156_020 Hb_006156_020 Hb_005800_040--Hb_006156_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0955315 0 0 0 0.0694918 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.173624 0

CAGE analysis