Hb_013394_010

Information

Type -
Description -
Location Contig13394: 4785-6721
Sequence    

Annotation

kegg
ID mdm:103443943
description laccase-14-like
nr
ID XP_008381067.1
description PREDICTED: laccase-14-like [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A067JSQ7
description Laccase OS=Jatropha curcas GN=JCGZ_01691 PE=3 SV=1
Gene Ontology
ID GO:0005576
description secretory isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_010 0.0 - - PREDICTED: laccase-14-like [Malus domestica]
2 Hb_011344_080 0.0122478691 - - -
3 Hb_005800_040 0.1019624416 - - -
4 Hb_001251_030 0.1169591068 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
5 Hb_108854_010 0.2047091396 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_008071_030 0.2074479391 - - -
7 Hb_000594_170 0.2153531904 - - -
8 Hb_006156_020 0.2424778629 - - -
9 Hb_052761_010 0.2437937372 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
10 Hb_000739_090 0.2713433448 - - -
11 Hb_103452_020 0.3135120175 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
12 Hb_004466_010 0.3205566253 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
13 Hb_185326_010 0.3261787315 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008891_010 0.3473666387 - - hypothetical protein EUGRSUZ_D01145 [Eucalyptus grandis]
15 Hb_000395_100 0.3519834635 - - Protein MYG1, putative [Ricinus communis]
16 Hb_000100_050 0.3885542237 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_011978_010 0.3885543884 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
18 Hb_000375_380 0.3885548963 - - -
19 Hb_004324_380 0.3885742421 - - -
20 Hb_027393_020 0.3888405915 - - -

Gene co-expression network

sample Hb_013394_010 Hb_013394_010 Hb_011344_080 Hb_011344_080 Hb_013394_010--Hb_011344_080 Hb_005800_040 Hb_005800_040 Hb_013394_010--Hb_005800_040 Hb_001251_030 Hb_001251_030 Hb_013394_010--Hb_001251_030 Hb_108854_010 Hb_108854_010 Hb_013394_010--Hb_108854_010 Hb_008071_030 Hb_008071_030 Hb_013394_010--Hb_008071_030 Hb_000594_170 Hb_000594_170 Hb_013394_010--Hb_000594_170 Hb_011344_080--Hb_005800_040 Hb_011344_080--Hb_001251_030 Hb_011344_080--Hb_108854_010 Hb_011344_080--Hb_000594_170 Hb_011344_080--Hb_008071_030 Hb_005800_040--Hb_001251_030 Hb_052761_010 Hb_052761_010 Hb_005800_040--Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_005800_040--Hb_000739_090 Hb_006156_020 Hb_006156_020 Hb_005800_040--Hb_006156_020 Hb_001251_030--Hb_052761_010 Hb_001251_030--Hb_000739_090 Hb_001251_030--Hb_006156_020 Hb_108854_010--Hb_000594_170 Hb_108854_010--Hb_005800_040 Hb_108854_010--Hb_001251_030 Hb_108854_010--Hb_052761_010 Hb_004466_010 Hb_004466_010 Hb_008071_030--Hb_004466_010 Hb_008071_030--Hb_005800_040 Hb_008071_030--Hb_001251_030 Hb_001948_010 Hb_001948_010 Hb_008071_030--Hb_001948_010 Hb_000594_170--Hb_008071_030 Hb_000908_010 Hb_000908_010 Hb_000594_170--Hb_000908_010 Hb_000594_170--Hb_005800_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0185877 0 0 0 0.0174163 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0133941 0

CAGE analysis