Hb_001251_030

Information

Type -
Description -
Location Contig1251: 13357-15092
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G189800g
description hypothetical protein
nr
ID XP_007158882.1
description hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
swissprot
ID O80575
description 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1
trembl
ID V7CPL4
description 6,7-dimethyl-8-ribityllumazine synthase OS=Phaseolus vulgaris GN=PHAVU_002G189800g PE=3 SV=1
Gene Ontology
ID GO:0009570
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07687: 14694-15503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001251_030 0.0 - - hypothetical protein PHAVU_002G189800g [Phaseolus vulgaris]
2 Hb_005800_040 0.0191688343 - - -
3 Hb_013394_010 0.1169591068 - - PREDICTED: laccase-14-like [Malus domestica]
4 Hb_011344_080 0.1289027494 - - -
5 Hb_052761_010 0.1538595643 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
6 Hb_000739_090 0.1838801863 - - -
7 Hb_006156_020 0.2326881469 - - -
8 Hb_008071_030 0.2521337176 - - -
9 Hb_108854_010 0.26770381 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
10 Hb_027393_020 0.2908680733 - - -
11 Hb_004324_380 0.2910639288 - - -
12 Hb_000375_380 0.2912048191 - - -
13 Hb_011978_010 0.291221544 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
14 Hb_000100_050 0.2912572094 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_007008_020 0.2934725723 - - -
16 Hb_185326_010 0.2966506358 - - conserved hypothetical protein [Ricinus communis]
17 Hb_046727_010 0.2966988323 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_080765_020 0.2973144029 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_004466_010 0.2981943695 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
20 Hb_000098_280 0.3004191409 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]

Gene co-expression network

sample Hb_001251_030 Hb_001251_030 Hb_005800_040 Hb_005800_040 Hb_001251_030--Hb_005800_040 Hb_013394_010 Hb_013394_010 Hb_001251_030--Hb_013394_010 Hb_011344_080 Hb_011344_080 Hb_001251_030--Hb_011344_080 Hb_052761_010 Hb_052761_010 Hb_001251_030--Hb_052761_010 Hb_000739_090 Hb_000739_090 Hb_001251_030--Hb_000739_090 Hb_006156_020 Hb_006156_020 Hb_001251_030--Hb_006156_020 Hb_005800_040--Hb_013394_010 Hb_005800_040--Hb_011344_080 Hb_005800_040--Hb_052761_010 Hb_005800_040--Hb_000739_090 Hb_005800_040--Hb_006156_020 Hb_013394_010--Hb_011344_080 Hb_108854_010 Hb_108854_010 Hb_013394_010--Hb_108854_010 Hb_008071_030 Hb_008071_030 Hb_013394_010--Hb_008071_030 Hb_000594_170 Hb_000594_170 Hb_013394_010--Hb_000594_170 Hb_011344_080--Hb_108854_010 Hb_011344_080--Hb_000594_170 Hb_011344_080--Hb_008071_030 Hb_052761_010--Hb_000739_090 Hb_005867_010 Hb_005867_010 Hb_052761_010--Hb_005867_010 Hb_001364_020 Hb_001364_020 Hb_052761_010--Hb_001364_020 Hb_000038_160 Hb_000038_160 Hb_052761_010--Hb_000038_160 Hb_000739_090--Hb_001364_020 Hb_000739_090--Hb_005867_010 Hb_000739_090--Hb_000038_160 Hb_006156_020--Hb_013394_010 Hb_006156_020--Hb_011344_080 Hb_006156_020--Hb_008071_030 Hb_004466_010 Hb_004466_010 Hb_006156_020--Hb_004466_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108119 0 0 0 0.108978 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0411231 0

CAGE analysis