Hb_001545_230

Information

Type -
Description -
Location Contig1545: 287224-287574
Sequence    

Annotation

kegg
ID rcu:RCOM_1608560
description Nonspecific lipid-transfer protein A, putative
nr
ID XP_002511594.1
description Nonspecific lipid-transfer protein A, putative [Ricinus communis]
swissprot
ID P10973
description Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1
trembl
ID B9RD05
description Non-specific lipid-transfer protein OS=Ricinus communis GN=RCOM_1608560 PE=3 SV=1
Gene Ontology
ID GO:0006810
description non-specific lipid-transfer protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_230 0.0 - - Nonspecific lipid-transfer protein A, putative [Ricinus communis]
2 Hb_001617_030 0.2219232458 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000908_010 0.2434143126 - - Disease resistance protein RGA2, putative [Ricinus communis]
4 Hb_001514_080 0.2929161303 - - hypothetical protein JCGZ_16082 [Jatropha curcas]
5 Hb_005085_010 0.3019650679 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
6 Hb_000010_120 0.3046838773 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
7 Hb_002325_020 0.308776654 - - zinc finger protein, putative [Ricinus communis]
8 Hb_011382_030 0.3115248473 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
9 Hb_030827_050 0.311899404 - - hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
10 Hb_022250_120 0.3131949955 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
11 Hb_151497_010 0.3134271882 - - -
12 Hb_000002_450 0.3157527116 - - hypothetical protein JCGZ_02285 [Jatropha curcas]
13 Hb_002422_040 0.3168240118 - - hypothetical protein POPTR_0016s02350g [Populus trichocarpa]
14 Hb_122025_010 0.3179763609 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
15 Hb_000917_140 0.3214444264 - - -
16 Hb_000317_210 0.3221517269 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
17 Hb_004117_300 0.3235758549 - - -
18 Hb_005144_020 0.3261096506 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
19 Hb_000982_040 0.326335129 - - conserved hypothetical protein [Ricinus communis]
20 Hb_181476_010 0.3266398877 - - -

Gene co-expression network

sample Hb_001545_230 Hb_001545_230 Hb_001617_030 Hb_001617_030 Hb_001545_230--Hb_001617_030 Hb_000908_010 Hb_000908_010 Hb_001545_230--Hb_000908_010 Hb_001514_080 Hb_001514_080 Hb_001545_230--Hb_001514_080 Hb_005085_010 Hb_005085_010 Hb_001545_230--Hb_005085_010 Hb_000010_120 Hb_000010_120 Hb_001545_230--Hb_000010_120 Hb_002325_020 Hb_002325_020 Hb_001545_230--Hb_002325_020 Hb_122025_010 Hb_122025_010 Hb_001617_030--Hb_122025_010 Hb_001617_030--Hb_001514_080 Hb_000317_210 Hb_000317_210 Hb_001617_030--Hb_000317_210 Hb_000537_120 Hb_000537_120 Hb_001617_030--Hb_000537_120 Hb_000563_070 Hb_000563_070 Hb_001617_030--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_001617_030--Hb_000264_250 Hb_008983_060 Hb_008983_060 Hb_000908_010--Hb_008983_060 Hb_000107_320 Hb_000107_320 Hb_000908_010--Hb_000107_320 Hb_030827_050 Hb_030827_050 Hb_000908_010--Hb_030827_050 Hb_003947_010 Hb_003947_010 Hb_000908_010--Hb_003947_010 Hb_001999_190 Hb_001999_190 Hb_000908_010--Hb_001999_190 Hb_005144_020 Hb_005144_020 Hb_001514_080--Hb_005144_020 Hb_001514_080--Hb_000317_210 Hb_000025_510 Hb_000025_510 Hb_001514_080--Hb_000025_510 Hb_176979_010 Hb_176979_010 Hb_001514_080--Hb_176979_010 Hb_004204_160 Hb_004204_160 Hb_001514_080--Hb_004204_160 Hb_005085_010--Hb_005144_020 Hb_005085_010--Hb_000010_120 Hb_001769_090 Hb_001769_090 Hb_005085_010--Hb_001769_090 Hb_011382_030 Hb_011382_030 Hb_005085_010--Hb_011382_030 Hb_005085_010--Hb_002325_020 Hb_027402_120 Hb_027402_120 Hb_005085_010--Hb_027402_120 Hb_006478_180 Hb_006478_180 Hb_000010_120--Hb_006478_180 Hb_000010_120--Hb_002325_020 Hb_000007_110 Hb_000007_110 Hb_000010_120--Hb_000007_110 Hb_002758_040 Hb_002758_040 Hb_000010_120--Hb_002758_040 Hb_000010_120--Hb_011382_030 Hb_001999_220 Hb_001999_220 Hb_000010_120--Hb_001999_220 Hb_003071_060 Hb_003071_060 Hb_002325_020--Hb_003071_060 Hb_002325_020--Hb_006478_180 Hb_000025_020 Hb_000025_020 Hb_002325_020--Hb_000025_020 Hb_003428_100 Hb_003428_100 Hb_002325_020--Hb_003428_100 Hb_002325_020--Hb_011382_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.289388 0.88724 0 0 1.0767 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.25178 0

CAGE analysis