Hb_005085_010

Information

Type -
Description -
Location Contig5085: 14981-15544
Sequence    

Annotation

kegg
ID rcu:RCOM_0495320
description Auxin-induced in root cultures protein 12 precursor, putative
nr
ID XP_002532005.1
description Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
swissprot
ID Q9FGK4
description Cytochrome b561 and DOMON domain-containing protein At5g47530 OS=Arabidopsis thaliana GN=At5g47530 PE=2 SV=1
trembl
ID B9T186
description Auxin-induced in root cultures protein 12, putative OS=Ricinus communis GN=RCOM_0495320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005085_010 0.0 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
2 Hb_005144_020 0.1983499087 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
3 Hb_000010_120 0.2163194647 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
4 Hb_001769_090 0.2251525818 - - PREDICTED: uncharacterized protein LOC105630842 [Jatropha curcas]
5 Hb_011382_030 0.2265449545 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
6 Hb_002325_020 0.2343709746 - - zinc finger protein, putative [Ricinus communis]
7 Hb_027402_120 0.2409974884 - - zinc finger protein, putative [Ricinus communis]
8 Hb_159769_010 0.2494198131 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
9 Hb_011671_380 0.2507588706 - - Blue copper protein precursor, putative [Ricinus communis]
10 Hb_106204_010 0.2522922601 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001617_030 0.2539230133 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001366_250 0.2555186655 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
13 Hb_000141_210 0.2566368576 - - PREDICTED: 36.4 kDa proline-rich protein-like [Camelina sativa]
14 Hb_000007_110 0.2586076839 - - PREDICTED: peroxidase 11 [Jatropha curcas]
15 Hb_002758_040 0.2587962443 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000243_330 0.2637268241 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004445_090 0.2646720711 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002534_080 0.2648151063 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000003_470 0.264942156 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005356_010 0.2654200099 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]

Gene co-expression network

sample Hb_005085_010 Hb_005085_010 Hb_005144_020 Hb_005144_020 Hb_005085_010--Hb_005144_020 Hb_000010_120 Hb_000010_120 Hb_005085_010--Hb_000010_120 Hb_001769_090 Hb_001769_090 Hb_005085_010--Hb_001769_090 Hb_011382_030 Hb_011382_030 Hb_005085_010--Hb_011382_030 Hb_002325_020 Hb_002325_020 Hb_005085_010--Hb_002325_020 Hb_027402_120 Hb_027402_120 Hb_005085_010--Hb_027402_120 Hb_001514_080 Hb_001514_080 Hb_005144_020--Hb_001514_080 Hb_004204_160 Hb_004204_160 Hb_005144_020--Hb_004204_160 Hb_159769_010 Hb_159769_010 Hb_005144_020--Hb_159769_010 Hb_000739_130 Hb_000739_130 Hb_005144_020--Hb_000739_130 Hb_000281_200 Hb_000281_200 Hb_005144_020--Hb_000281_200 Hb_039655_010 Hb_039655_010 Hb_005144_020--Hb_039655_010 Hb_006478_180 Hb_006478_180 Hb_000010_120--Hb_006478_180 Hb_000010_120--Hb_002325_020 Hb_000007_110 Hb_000007_110 Hb_000010_120--Hb_000007_110 Hb_002758_040 Hb_002758_040 Hb_000010_120--Hb_002758_040 Hb_000010_120--Hb_011382_030 Hb_001999_220 Hb_001999_220 Hb_000010_120--Hb_001999_220 Hb_011671_380 Hb_011671_380 Hb_001769_090--Hb_011671_380 Hb_045992_010 Hb_045992_010 Hb_001769_090--Hb_045992_010 Hb_001769_090--Hb_027402_120 Hb_001218_020 Hb_001218_020 Hb_001769_090--Hb_001218_020 Hb_002999_090 Hb_002999_090 Hb_001769_090--Hb_002999_090 Hb_139460_010 Hb_139460_010 Hb_001769_090--Hb_139460_010 Hb_011382_030--Hb_002758_040 Hb_145535_010 Hb_145535_010 Hb_011382_030--Hb_145535_010 Hb_003446_030 Hb_003446_030 Hb_011382_030--Hb_003446_030 Hb_011382_030--Hb_027402_120 Hb_000141_210 Hb_000141_210 Hb_011382_030--Hb_000141_210 Hb_000160_230 Hb_000160_230 Hb_011382_030--Hb_000160_230 Hb_003071_060 Hb_003071_060 Hb_002325_020--Hb_003071_060 Hb_002325_020--Hb_006478_180 Hb_000025_020 Hb_000025_020 Hb_002325_020--Hb_000025_020 Hb_003428_100 Hb_003428_100 Hb_002325_020--Hb_003428_100 Hb_002325_020--Hb_011382_030 Hb_002534_080 Hb_002534_080 Hb_027402_120--Hb_002534_080 Hb_004564_010 Hb_004564_010 Hb_027402_120--Hb_004564_010 Hb_002615_050 Hb_002615_050 Hb_027402_120--Hb_002615_050 Hb_028013_010 Hb_028013_010 Hb_027402_120--Hb_028013_010 Hb_000488_040 Hb_000488_040 Hb_027402_120--Hb_000488_040 Hb_027402_120--Hb_002758_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108227 0.357841 0 0.267243 0.370885 0.170144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221739 0 0 4.84251 0

CAGE analysis