Hb_011671_380

Information

Type -
Description -
Location Contig11671: 297431-298127
Sequence    

Annotation

kegg
ID rcu:RCOM_1502420
description Blue copper protein precursor, putative
nr
ID XP_002511023.1
description Blue copper protein precursor, putative [Ricinus communis]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9R9Z8
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_1502420 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_380 0.0 - - Blue copper protein precursor, putative [Ricinus communis]
2 Hb_027402_120 0.0996982075 - - zinc finger protein, putative [Ricinus communis]
3 Hb_001769_090 0.1037899634 - - PREDICTED: uncharacterized protein LOC105630842 [Jatropha curcas]
4 Hb_002615_050 0.1038530316 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_007810_140 0.1066569342 - - Ankyrin repeat-containing protein [Medicago truncatula]
6 Hb_139460_010 0.1082138764 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
7 Hb_001863_290 0.1085300264 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
8 Hb_002534_080 0.1107373706 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000160_230 0.1109826449 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
10 Hb_011824_010 0.1124825672 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
11 Hb_000859_040 0.1127755809 - - Early nodulin 16 precursor, putative [Ricinus communis]
12 Hb_004564_010 0.1182627763 - - receptor-kinase, putative [Ricinus communis]
13 Hb_011856_010 0.1196712562 - - cytochrome P450, putative [Ricinus communis]
14 Hb_107258_010 0.1200101586 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
15 Hb_122574_020 0.1242704167 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
16 Hb_000488_040 0.1251126004 - - unnamed protein product [Vitis vinifera]
17 Hb_010712_020 0.1255717472 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
18 Hb_001442_080 0.1264120753 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
19 Hb_145535_010 0.1264291108 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_012652_020 0.1266749164 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_380 Hb_011671_380 Hb_027402_120 Hb_027402_120 Hb_011671_380--Hb_027402_120 Hb_001769_090 Hb_001769_090 Hb_011671_380--Hb_001769_090 Hb_002615_050 Hb_002615_050 Hb_011671_380--Hb_002615_050 Hb_007810_140 Hb_007810_140 Hb_011671_380--Hb_007810_140 Hb_139460_010 Hb_139460_010 Hb_011671_380--Hb_139460_010 Hb_001863_290 Hb_001863_290 Hb_011671_380--Hb_001863_290 Hb_002534_080 Hb_002534_080 Hb_027402_120--Hb_002534_080 Hb_004564_010 Hb_004564_010 Hb_027402_120--Hb_004564_010 Hb_027402_120--Hb_002615_050 Hb_028013_010 Hb_028013_010 Hb_027402_120--Hb_028013_010 Hb_000488_040 Hb_000488_040 Hb_027402_120--Hb_000488_040 Hb_002758_040 Hb_002758_040 Hb_027402_120--Hb_002758_040 Hb_045992_010 Hb_045992_010 Hb_001769_090--Hb_045992_010 Hb_001769_090--Hb_027402_120 Hb_001218_020 Hb_001218_020 Hb_001769_090--Hb_001218_020 Hb_002999_090 Hb_002999_090 Hb_001769_090--Hb_002999_090 Hb_001769_090--Hb_139460_010 Hb_002615_050--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_002615_050--Hb_000160_230 Hb_006196_020 Hb_006196_020 Hb_002615_050--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_002615_050--Hb_011824_010 Hb_000859_040 Hb_000859_040 Hb_002615_050--Hb_000859_040 Hb_002615_050--Hb_139460_010 Hb_007810_140--Hb_000160_230 Hb_007810_140--Hb_000859_040 Hb_007810_140--Hb_006196_020 Hb_007810_140--Hb_011824_010 Hb_007810_140--Hb_139460_010 Hb_011856_010 Hb_011856_010 Hb_139460_010--Hb_011856_010 Hb_139460_010--Hb_011824_010 Hb_001173_050 Hb_001173_050 Hb_139460_010--Hb_001173_050 Hb_139460_010--Hb_000160_230 Hb_107258_010 Hb_107258_010 Hb_001863_290--Hb_107258_010 Hb_001863_290--Hb_011824_010 Hb_001442_080 Hb_001442_080 Hb_001863_290--Hb_001442_080 Hb_010712_020 Hb_010712_020 Hb_001863_290--Hb_010712_020 Hb_001863_290--Hb_004564_010 Hb_064398_010 Hb_064398_010 Hb_001863_290--Hb_064398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.937462 0 0.320257 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104072 0 0 7.35454 0

CAGE analysis