Hb_003071_060

Information

Type -
Description -
Location Contig3071: 58914-63088
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14130g
description hypothetical protein
nr
ID XP_012077538.1
description PREDICTED: beta-galactosidase 15-like [Jatropha curcas]
swissprot
ID P49676
description Beta-galactosidase OS=Brassica oleracea PE=2 SV=1
trembl
ID B9MT16
description Beta-galactosidase OS=Populus trichocarpa GN=POPTR_0006s14130g PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003071_060 0.0 - - PREDICTED: beta-galactosidase 15-like [Jatropha curcas]
2 Hb_002325_020 0.1208793168 - - zinc finger protein, putative [Ricinus communis]
3 Hb_006478_180 0.1700604996 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
4 Hb_006452_050 0.1802298178 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
5 Hb_112082_030 0.187634712 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_002960_170 0.1935638246 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
7 Hb_132880_030 0.1953921984 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
8 Hb_000010_120 0.1956871279 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
9 Hb_000025_020 0.20152282 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
10 Hb_000007_110 0.2057576281 - - PREDICTED: peroxidase 11 [Jatropha curcas]
11 Hb_003428_100 0.2064077315 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_000251_100 0.208573039 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_002758_040 0.2096806893 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_011382_030 0.211406154 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
15 Hb_005511_050 0.2120040238 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
16 Hb_000220_160 0.2130986988 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
17 Hb_002234_150 0.2143886508 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
18 Hb_000025_510 0.2158326977 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
19 Hb_005288_040 0.2170603165 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
20 Hb_000522_040 0.2171619534 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003071_060 Hb_003071_060 Hb_002325_020 Hb_002325_020 Hb_003071_060--Hb_002325_020 Hb_006478_180 Hb_006478_180 Hb_003071_060--Hb_006478_180 Hb_006452_050 Hb_006452_050 Hb_003071_060--Hb_006452_050 Hb_112082_030 Hb_112082_030 Hb_003071_060--Hb_112082_030 Hb_002960_170 Hb_002960_170 Hb_003071_060--Hb_002960_170 Hb_132880_030 Hb_132880_030 Hb_003071_060--Hb_132880_030 Hb_000010_120 Hb_000010_120 Hb_002325_020--Hb_000010_120 Hb_002325_020--Hb_006478_180 Hb_000025_020 Hb_000025_020 Hb_002325_020--Hb_000025_020 Hb_003428_100 Hb_003428_100 Hb_002325_020--Hb_003428_100 Hb_011382_030 Hb_011382_030 Hb_002325_020--Hb_011382_030 Hb_003538_020 Hb_003538_020 Hb_006478_180--Hb_003538_020 Hb_002758_040 Hb_002758_040 Hb_006478_180--Hb_002758_040 Hb_006478_180--Hb_132880_030 Hb_006478_180--Hb_112082_030 Hb_005511_050 Hb_005511_050 Hb_006478_180--Hb_005511_050 Hb_006478_180--Hb_000010_120 Hb_012019_020 Hb_012019_020 Hb_006452_050--Hb_012019_020 Hb_002234_150 Hb_002234_150 Hb_006452_050--Hb_002234_150 Hb_006452_050--Hb_112082_030 Hb_000101_050 Hb_000101_050 Hb_006452_050--Hb_000101_050 Hb_000411_060 Hb_000411_060 Hb_006452_050--Hb_000411_060 Hb_000976_020 Hb_000976_020 Hb_006452_050--Hb_000976_020 Hb_001357_260 Hb_001357_260 Hb_112082_030--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_002917_010 Hb_002917_010 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_003399_030 Hb_003399_030 Hb_002960_170--Hb_003399_030 Hb_000684_020 Hb_000684_020 Hb_002960_170--Hb_000684_020 Hb_003900_050 Hb_003900_050 Hb_002960_170--Hb_003900_050 Hb_110218_010 Hb_110218_010 Hb_002960_170--Hb_110218_010 Hb_004200_040 Hb_004200_040 Hb_002960_170--Hb_004200_040 Hb_002960_170--Hb_006452_050 Hb_132880_030--Hb_005511_050 Hb_000220_160 Hb_000220_160 Hb_132880_030--Hb_000220_160 Hb_000251_100 Hb_000251_100 Hb_132880_030--Hb_000251_100 Hb_001080_310 Hb_001080_310 Hb_132880_030--Hb_001080_310 Hb_132880_030--Hb_112082_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0224521 0.162867 0.011087 0.0164931 0.0215009 0.0070158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0668176 0 0.864767 0.0284288

CAGE analysis