Hb_000537_120

Information

Type -
Description -
Location Contig537: 201859-208006
Sequence    

Annotation

kegg
ID rcu:RCOM_0823640
description Ent-kaurene synthase B, chloroplast precursor, putative (EC:4.2.3.19)
nr
ID XP_002525842.1
description Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q0JA83
description Ent-kaurene synthase-like 3 OS=Oryza sativa subsp. japonica GN=KSL3 PE=2 SV=1
trembl
ID B9SIM3
description Ent-kaurene synthase B, chloroplast, putative OS=Ricinus communis GN=RCOM_0823640 PE=4 SV=1
Gene Ontology
ID GO:0000287
description ent-kaurene synthase chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000537_120 0.0 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
2 Hb_001114_220 0.0464221167 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
3 Hb_122025_010 0.0803958911 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
4 Hb_000563_070 0.0818339183 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
5 Hb_000264_250 0.0818673976 - - thioredoxin family protein [Arabidopsis thaliana]
6 Hb_002551_010 0.0833029331 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_004592_020 0.084769899 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
8 Hb_106528_010 0.0857197039 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
9 Hb_005747_020 0.0859982095 - - bacterial-induced peroxidase [Gossypium schwendimanii]
10 Hb_005747_040 0.0861884298 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
11 Hb_007342_020 0.0876900023 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_094462_010 0.0877896903 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
13 Hb_001114_290 0.0939180367 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000419_080 0.094234772 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
15 Hb_000488_040 0.0946394685 - - unnamed protein product [Vitis vinifera]
16 Hb_002900_020 0.0968760015 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
17 Hb_000483_020 0.0980442161 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
18 Hb_001032_060 0.1012213401 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
19 Hb_115007_010 0.1014114357 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_173102_010 0.104152141 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000537_120 Hb_000537_120 Hb_001114_220 Hb_001114_220 Hb_000537_120--Hb_001114_220 Hb_122025_010 Hb_122025_010 Hb_000537_120--Hb_122025_010 Hb_000563_070 Hb_000563_070 Hb_000537_120--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000537_120--Hb_000264_250 Hb_002551_010 Hb_002551_010 Hb_000537_120--Hb_002551_010 Hb_004592_020 Hb_004592_020 Hb_000537_120--Hb_004592_020 Hb_001114_220--Hb_002551_010 Hb_001114_220--Hb_000264_250 Hb_106528_010 Hb_106528_010 Hb_001114_220--Hb_106528_010 Hb_005747_040 Hb_005747_040 Hb_001114_220--Hb_005747_040 Hb_001114_220--Hb_000563_070 Hb_122025_010--Hb_106528_010 Hb_122025_010--Hb_005747_040 Hb_122025_010--Hb_002551_010 Hb_122025_010--Hb_000264_250 Hb_001114_290 Hb_001114_290 Hb_122025_010--Hb_001114_290 Hb_122025_010--Hb_000563_070 Hb_000563_070--Hb_000264_250 Hb_000563_070--Hb_002551_010 Hb_005747_020 Hb_005747_020 Hb_000563_070--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_000563_070--Hb_094462_010 Hb_000563_070--Hb_106528_010 Hb_000563_070--Hb_005747_040 Hb_000264_250--Hb_002551_010 Hb_000264_250--Hb_106528_010 Hb_000264_250--Hb_005747_040 Hb_000264_250--Hb_005747_020 Hb_000264_250--Hb_094462_010 Hb_002551_010--Hb_106528_010 Hb_002551_010--Hb_005747_040 Hb_002551_010--Hb_001114_290 Hb_002551_010--Hb_005747_020 Hb_000488_040 Hb_000488_040 Hb_004592_020--Hb_000488_040 Hb_002900_020 Hb_002900_020 Hb_004592_020--Hb_002900_020 Hb_001032_060 Hb_001032_060 Hb_004592_020--Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_004592_020--Hb_000419_080 Hb_000483_020 Hb_000483_020 Hb_004592_020--Hb_000483_020 Hb_018709_010 Hb_018709_010 Hb_004592_020--Hb_018709_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.427758 0 0 0.0114663 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.84624 0.046054

CAGE analysis