Hb_001114_220

Information

Type -
Description -
Location Contig1114: 214984-215337
Sequence    

Annotation

kegg
ID rcu:RCOM_0885330
description lipid binding protein, putative
nr
ID KDP40971.1
description hypothetical protein JCGZ_24970 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_220 0.0 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
2 Hb_000537_120 0.0464221167 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
3 Hb_002551_010 0.0512260806 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000264_250 0.0513288884 - - thioredoxin family protein [Arabidopsis thaliana]
5 Hb_106528_010 0.0530397106 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
6 Hb_005747_040 0.0534754902 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
7 Hb_000563_070 0.0535789502 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
8 Hb_005747_020 0.0593869236 - - bacterial-induced peroxidase [Gossypium schwendimanii]
9 Hb_001114_290 0.0618614455 - - conserved hypothetical protein [Ricinus communis]
10 Hb_094462_010 0.0671284351 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
11 Hb_173102_010 0.073806805 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_000419_080 0.0746752216 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
13 Hb_122025_010 0.0765937542 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
14 Hb_004592_020 0.0782510126 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
15 Hb_000488_040 0.0797004015 - - unnamed protein product [Vitis vinifera]
16 Hb_001410_090 0.0829733332 - - transferase, putative [Ricinus communis]
17 Hb_001032_060 0.0846747011 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
18 Hb_002997_010 0.0872377665 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
19 Hb_000022_270 0.0921647837 - - conserved hypothetical protein [Ricinus communis]
20 Hb_169426_010 0.0926261231 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001114_220 Hb_001114_220 Hb_000537_120 Hb_000537_120 Hb_001114_220--Hb_000537_120 Hb_002551_010 Hb_002551_010 Hb_001114_220--Hb_002551_010 Hb_000264_250 Hb_000264_250 Hb_001114_220--Hb_000264_250 Hb_106528_010 Hb_106528_010 Hb_001114_220--Hb_106528_010 Hb_005747_040 Hb_005747_040 Hb_001114_220--Hb_005747_040 Hb_000563_070 Hb_000563_070 Hb_001114_220--Hb_000563_070 Hb_122025_010 Hb_122025_010 Hb_000537_120--Hb_122025_010 Hb_000537_120--Hb_000563_070 Hb_000537_120--Hb_000264_250 Hb_000537_120--Hb_002551_010 Hb_004592_020 Hb_004592_020 Hb_000537_120--Hb_004592_020 Hb_002551_010--Hb_106528_010 Hb_002551_010--Hb_000264_250 Hb_002551_010--Hb_005747_040 Hb_002551_010--Hb_000563_070 Hb_001114_290 Hb_001114_290 Hb_002551_010--Hb_001114_290 Hb_005747_020 Hb_005747_020 Hb_002551_010--Hb_005747_020 Hb_000264_250--Hb_000563_070 Hb_000264_250--Hb_106528_010 Hb_000264_250--Hb_005747_040 Hb_000264_250--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_000264_250--Hb_094462_010 Hb_106528_010--Hb_005747_040 Hb_106528_010--Hb_001114_290 Hb_106528_010--Hb_000563_070 Hb_173102_010 Hb_173102_010 Hb_106528_010--Hb_173102_010 Hb_005747_040--Hb_001114_290 Hb_005747_040--Hb_000563_070 Hb_005747_040--Hb_173102_010 Hb_000563_070--Hb_005747_020 Hb_000563_070--Hb_094462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.98426 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 57.4867 0.336323

CAGE analysis