Hb_000317_210

Information

Type transcription factor
Description TF Family: MYB
Location Contig317: 161411-162657
Sequence    

Annotation

kegg
ID rcu:RCOM_1176600
description r2r3-myb transcription factor, putative
nr
ID XP_012088367.1
description PREDICTED: transcription factor MYB39 [Jatropha curcas]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID A0A067JN53
description MYB family protein OS=Jatropha curcas GN=JCGZ_25860 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33376: 161316-162001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_210 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
2 Hb_071381_010 0.1047521802 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
3 Hb_010839_070 0.1078794694 - - uncharacterized protein LOC100810725 [Glycine max]
4 Hb_001571_010 0.1126678928 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
5 Hb_117464_010 0.1133220505 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
6 Hb_008160_020 0.1135629362 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
7 Hb_000640_270 0.1229272456 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
8 Hb_001081_020 0.1312120373 - - Cytochrome P450 76C2 [Triticum urartu]
9 Hb_000405_040 0.1449882845 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
10 Hb_039342_030 0.1462203368 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006196_020 0.1521326766 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
12 Hb_001514_080 0.1547977958 - - hypothetical protein JCGZ_16082 [Jatropha curcas]
13 Hb_000025_510 0.1551773863 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
14 Hb_042664_010 0.1553062672 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
15 Hb_003121_020 0.1593859579 - - secretory peroxidase PX3 [Manihot esculenta]
16 Hb_000327_300 0.1610802971 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
17 Hb_004586_080 0.1650134983 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
18 Hb_122025_010 0.1654857488 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
19 Hb_016172_010 0.1714128869 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
20 Hb_004217_010 0.1725864317 - - putative wall-associated kinase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000317_210 Hb_000317_210 Hb_071381_010 Hb_071381_010 Hb_000317_210--Hb_071381_010 Hb_010839_070 Hb_010839_070 Hb_000317_210--Hb_010839_070 Hb_001571_010 Hb_001571_010 Hb_000317_210--Hb_001571_010 Hb_117464_010 Hb_117464_010 Hb_000317_210--Hb_117464_010 Hb_008160_020 Hb_008160_020 Hb_000317_210--Hb_008160_020 Hb_000640_270 Hb_000640_270 Hb_000317_210--Hb_000640_270 Hb_071381_010--Hb_008160_020 Hb_071381_010--Hb_117464_010 Hb_071381_010--Hb_010839_070 Hb_071381_010--Hb_001571_010 Hb_001081_020 Hb_001081_020 Hb_071381_010--Hb_001081_020 Hb_000405_040 Hb_000405_040 Hb_071381_010--Hb_000405_040 Hb_010839_070--Hb_000640_270 Hb_010839_070--Hb_117464_010 Hb_010839_070--Hb_008160_020 Hb_010839_070--Hb_001571_010 Hb_010839_070--Hb_001081_020 Hb_001571_010--Hb_117464_010 Hb_001571_010--Hb_008160_020 Hb_001571_010--Hb_000640_270 Hb_003121_020 Hb_003121_020 Hb_001571_010--Hb_003121_020 Hb_117464_010--Hb_008160_020 Hb_117464_010--Hb_000640_270 Hb_117464_010--Hb_001081_020 Hb_039342_030 Hb_039342_030 Hb_117464_010--Hb_039342_030 Hb_008160_020--Hb_001081_020 Hb_008160_020--Hb_000640_270 Hb_008160_020--Hb_039342_030 Hb_000640_270--Hb_001081_020 Hb_000640_270--Hb_071381_010 Hb_000640_270--Hb_039342_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0994819 0.0496246 0 0.0213549 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.893363 0

CAGE analysis