Hb_000025_510

Information

Type -
Description -
Location Contig25: 504417-507371
Sequence    

Annotation

kegg
ID vvi:100245876
description receptor-like protein 12
nr
ID XP_003633343.1
description PREDICTED: receptor-like protein 12 [Vitis vinifera]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A5ALJ4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022039 PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_510 0.0 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
2 Hb_006478_180 0.1427584617 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
3 Hb_000317_210 0.1551773863 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
4 Hb_112082_030 0.1561579469 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_008705_070 0.1568332169 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
6 Hb_005511_050 0.1596927468 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
7 Hb_042664_010 0.1612981053 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
8 Hb_001514_080 0.1640628048 - - hypothetical protein JCGZ_16082 [Jatropha curcas]
9 Hb_003538_020 0.1648661702 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
10 Hb_039342_030 0.1663265734 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003253_020 0.1665865658 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
12 Hb_001328_110 0.1667759018 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
13 Hb_000617_340 0.1676850849 - - respiratory burst oxidase B [Manihot esculenta]
14 Hb_003891_060 0.1677012234 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
15 Hb_001901_090 0.1687138831 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_000245_140 0.1699512717 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
17 Hb_008406_010 0.1701938507 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
18 Hb_016172_010 0.170746354 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
19 Hb_000003_470 0.1709130857 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001357_260 0.1730734592 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_510 Hb_000025_510 Hb_006478_180 Hb_006478_180 Hb_000025_510--Hb_006478_180 Hb_000317_210 Hb_000317_210 Hb_000025_510--Hb_000317_210 Hb_112082_030 Hb_112082_030 Hb_000025_510--Hb_112082_030 Hb_008705_070 Hb_008705_070 Hb_000025_510--Hb_008705_070 Hb_005511_050 Hb_005511_050 Hb_000025_510--Hb_005511_050 Hb_042664_010 Hb_042664_010 Hb_000025_510--Hb_042664_010 Hb_003538_020 Hb_003538_020 Hb_006478_180--Hb_003538_020 Hb_002758_040 Hb_002758_040 Hb_006478_180--Hb_002758_040 Hb_132880_030 Hb_132880_030 Hb_006478_180--Hb_132880_030 Hb_006478_180--Hb_112082_030 Hb_006478_180--Hb_005511_050 Hb_000010_120 Hb_000010_120 Hb_006478_180--Hb_000010_120 Hb_071381_010 Hb_071381_010 Hb_000317_210--Hb_071381_010 Hb_010839_070 Hb_010839_070 Hb_000317_210--Hb_010839_070 Hb_001571_010 Hb_001571_010 Hb_000317_210--Hb_001571_010 Hb_117464_010 Hb_117464_010 Hb_000317_210--Hb_117464_010 Hb_008160_020 Hb_008160_020 Hb_000317_210--Hb_008160_020 Hb_000640_270 Hb_000640_270 Hb_000317_210--Hb_000640_270 Hb_001357_260 Hb_001357_260 Hb_112082_030--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_002917_010 Hb_002917_010 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_001328_110 Hb_001328_110 Hb_008705_070--Hb_001328_110 Hb_039342_030 Hb_039342_030 Hb_008705_070--Hb_039342_030 Hb_025526_090 Hb_025526_090 Hb_008705_070--Hb_025526_090 Hb_003052_070 Hb_003052_070 Hb_008705_070--Hb_003052_070 Hb_016172_010 Hb_016172_010 Hb_008705_070--Hb_016172_010 Hb_008705_070--Hb_042664_010 Hb_005511_050--Hb_132880_030 Hb_000160_230 Hb_000160_230 Hb_005511_050--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_005511_050--Hb_007810_140 Hb_005511_050--Hb_039342_030 Hb_001999_220 Hb_001999_220 Hb_005511_050--Hb_001999_220 Hb_000859_040 Hb_000859_040 Hb_005511_050--Hb_000859_040 Hb_006196_020 Hb_006196_020 Hb_042664_010--Hb_006196_020 Hb_001901_090 Hb_001901_090 Hb_042664_010--Hb_001901_090 Hb_002615_050 Hb_002615_050 Hb_042664_010--Hb_002615_050 Hb_042664_010--Hb_039342_030 Hb_002534_080 Hb_002534_080 Hb_042664_010--Hb_002534_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0567848 0.0243314 0.0187314 0.0191114 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0116098 0 0.538809 0

CAGE analysis