Hb_171108_010

Information

Type -
Description -
Location Contig171108: 5521-9785
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171108_010 0.0 - - -
2 Hb_000905_070 0.1783632307 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
3 Hb_002493_030 0.2048821545 - - -
4 Hb_004007_150 0.2429782279 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
5 Hb_043655_010 0.2452378134 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
6 Hb_003534_040 0.2498167922 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
7 Hb_000922_310 0.2501087267 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
8 Hb_007805_020 0.2533717273 - - -
9 Hb_004330_030 0.2625972347 - - -
10 Hb_001691_050 0.2686747807 - - -
11 Hb_000362_240 0.2688313991 - - conserved hypothetical protein [Ricinus communis]
12 Hb_073212_010 0.2788486557 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
13 Hb_001944_030 0.2805617573 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
14 Hb_004650_080 0.2842222781 - - -
15 Hb_031073_010 0.2842711688 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
16 Hb_004899_280 0.2849532338 - - -
17 Hb_002234_220 0.2869743319 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
18 Hb_034569_020 0.2914590555 - - -
19 Hb_002124_020 0.2922137726 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
20 Hb_002232_290 0.2985975617 - - -

Gene co-expression network

sample Hb_171108_010 Hb_171108_010 Hb_000905_070 Hb_000905_070 Hb_171108_010--Hb_000905_070 Hb_002493_030 Hb_002493_030 Hb_171108_010--Hb_002493_030 Hb_004007_150 Hb_004007_150 Hb_171108_010--Hb_004007_150 Hb_043655_010 Hb_043655_010 Hb_171108_010--Hb_043655_010 Hb_003534_040 Hb_003534_040 Hb_171108_010--Hb_003534_040 Hb_000922_310 Hb_000922_310 Hb_171108_010--Hb_000922_310 Hb_000905_070--Hb_002493_030 Hb_005892_070 Hb_005892_070 Hb_000905_070--Hb_005892_070 Hb_000100_050 Hb_000100_050 Hb_000905_070--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000905_070--Hb_011978_010 Hb_000375_380 Hb_000375_380 Hb_000905_070--Hb_000375_380 Hb_001691_050 Hb_001691_050 Hb_002493_030--Hb_001691_050 Hb_007634_020 Hb_007634_020 Hb_002493_030--Hb_007634_020 Hb_002493_030--Hb_004007_150 Hb_002232_290 Hb_002232_290 Hb_002493_030--Hb_002232_290 Hb_004007_150--Hb_003534_040 Hb_073212_010 Hb_073212_010 Hb_004007_150--Hb_073212_010 Hb_000101_210 Hb_000101_210 Hb_004007_150--Hb_000101_210 Hb_001677_050 Hb_001677_050 Hb_004007_150--Hb_001677_050 Hb_031073_010 Hb_031073_010 Hb_004007_150--Hb_031073_010 Hb_088542_010 Hb_088542_010 Hb_004007_150--Hb_088542_010 Hb_043655_010--Hb_001691_050 Hb_000836_050 Hb_000836_050 Hb_043655_010--Hb_000836_050 Hb_043655_010--Hb_002232_290 Hb_002026_230 Hb_002026_230 Hb_043655_010--Hb_002026_230 Hb_000590_080 Hb_000590_080 Hb_043655_010--Hb_000590_080 Hb_029510_010 Hb_029510_010 Hb_043655_010--Hb_029510_010 Hb_003534_040--Hb_073212_010 Hb_018344_010 Hb_018344_010 Hb_003534_040--Hb_018344_010 Hb_027998_030 Hb_027998_030 Hb_003534_040--Hb_027998_030 Hb_003534_040--Hb_001691_050 Hb_003534_040--Hb_000101_210 Hb_034569_020 Hb_034569_020 Hb_000922_310--Hb_034569_020 Hb_004899_280 Hb_004899_280 Hb_000922_310--Hb_004899_280 Hb_046727_010 Hb_046727_010 Hb_000922_310--Hb_046727_010 Hb_080765_020 Hb_080765_020 Hb_000922_310--Hb_080765_020 Hb_000098_280 Hb_000098_280 Hb_000922_310--Hb_000098_280 Hb_007008_020 Hb_007008_020 Hb_000922_310--Hb_007008_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19826 1.52195 0.374977 0.344454 8.2531 0.484176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.23014 0.360433 0.506158

CAGE analysis